You are querying gene by "AT2G18550".

Locus: AT2G18550 Alias: ATHB21

Expression of this gene is regulated by hormone (see microarray data for this gene), but no genetic evidence or Gene Ontology evidence yet supported that this is a hormone-related gene.

Basic gene information ( show / hide contents )

Locus AT2G18550 | Chromosome: 2 | Strand: -
Description Encodes a homeodomain leucine zipper class I (HD-Zip I) protein.
Alias
ATHB21( alias )
HB-2( alias )
Gene model
AT2G18550.1 | From: 8056745 | To: 8058295
Sequence
AT2G18550.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
DNA binding PMID:
transcription factor activity PMID: 11118137
cellular_component
nucleus PMID:
biological_process
regulation of transcription, DNA-dependent PMID:
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT2G18550.1 
length: 663 
miRNA : ath-miR864-5p
length: 21 
 
mfe: -22.3 kcal/mol 
p-value: 0.013736 
 
position  228 
target 5' C       A       A G     A 
           UUUGAAG CGAUCAU A CUUGA  
           AAACUUC GUUAGUA U GGACU  
miRNA  3'         A                 
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_49541
AccessionTaxon
NP_001049280Oryza sativa Japonica Group
NP_179445 ( AT2G18550 )Arabidopsis thaliana
NP_195392Arabidopsis thaliana
NP_001060106Oryza sativa Japonica Group
29646.m001066Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
Gene3DG3DSA:1.10.10.603e-1425121IPR012287Homeodomain-related
PROSITEPS5007117.02256116IPR001356Homeobox
SuperFamilySSF466893.4e-1757131IPR009057Homeodomain-like
SMARTSM003893e-2059120IPR001356Homeobox
PfamPF000462.2e-1762115IPR001356Homeobox
PRINTSPR000311.4e-058796IPR000047Helix-turn-helix motif, lambda-like repressor
PROSITEPS00027NA91114IPR017970Homeobox, conserved site
PRINTSPR000311.4e-0596112IPR000047Helix-turn-helix motif, lambda-like repressor