You are querying gene by "AT2G16940".

Locus: AT2G16940 Alias: AT2G16940

Expression of this gene is regulated by hormone (see microarray data for this gene), but no genetic evidence or Gene Ontology evidence yet supported that this is a hormone-related gene.

Basic gene information ( show / hide contents )

Locus AT2G16940 | Chromosome: 2 | Strand: -
Description RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: mRNA processing; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Splicing factor, CC1-like (InterPro:IPR006509), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT5G09880.1); Has 89001 Blast hits to 40771 proteins in 1338 species: Archae - 64; Bacteria - 6713; Metazoa - 47814; Fungi - 9285; Plants - 6716; Viruses - 445; Other Eukaryotes - 17964 (source: NCBI BLink).
AT2G16940( alias )
Gene model
AT2G16940.1 | From: 7349689 | To: 7354490
AT2G16940.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
nucleic acid binding PMID:
nucleus PMID:
mRNA processing PMID:
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

Hormone treatment related datasets  
Abiotic stress treatment related datasets (in root)  
Abiotic stress treatment related datasets (in shoot)  
Development related datasets  

miRNA interaction information for this gene

(Note:target use cDNA sequence)
target: AT2G16940.1 
length: 2131 
miRNA : ath-miR414
length: 21 
mfe: -35.6 kcal/mol 
p-value: 0.000082 
position  1317 
target 5' G                    C 
miRNA  3' A                      

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_12289
NP_565399 ( AT2G16940 )Arabidopsis thaliana
NP_001064686Oryza sativa Japonica Group
fgenesh1_pg.C_Chr_08.0001000205Ostreococcus tauri
estExt_fgenesh1_pg.C_2070055Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_3320014Physcomitrella patens subsp. patens
30183.m001297Ricinus communis
NP_568220Arabidopsis thaliana
DatabaseEntry IDE-valueStartEndInterPro IDDescription
TIGRFAMTIGR016220.071558IPR006509Splicing factor, CC1-like
Gene3DG3DSA:, alpha-beta plait
PANTHERPTHR10432:SF600.0177558IPR006509Splicing factor, CC1-like
PROSITEPS501020.0182259IPR000504RNA recognition motif, RNP-1
SMARTSM003603.599996434359868E-16183255IPR000504RNA recognition motif, RNP-1
PfamPF000765.000000000000002E-7192252IPR000504RNA recognition motif, RNP-1
Gene3DG3DSA:, alpha-beta plait
PROSITEPS501020.0285362IPR000504RNA recognition motif, RNP-1
SMARTSM003603.399999724377172E-24286358IPR000504RNA recognition motif, RNP-1
PfamPF000766.79999999999998E-17287356IPR000504RNA recognition motif, RNP-1
Gene3DG3DSA:, alpha-beta plait
PROSITEPS501020.0465548IPR000504RNA recognition motif, RNP-1
SMARTSM003601.6999992228404958E-7466544IPR000504RNA recognition motif, RNP-1
PfamPF000760.14488541IPR000504RNA recognition motif, RNP-1