You are querying gene by "AT2G04880".

Locus: AT2G04880 Alias: ATWRKY1

Hormone Evidence Function category Gene Description PMID
salicylic acidGeneOntology - salicylic acid mediated signaling pathway 17264121

Basic gene information ( show / hide contents )

Locus AT2G04880 | Chromosome: 2 | Strand: +
Description salicylic acid mediated signaling pathway
Alias
ATWRKY1( alias )
WRKY1( alias )
ZAP1( alias )
Gene model
AT2G04880.1 | From: 1717885 | To: 1720523
AT2G04880.2 | From: 1717885 | To: 1720523
Sequence
AT2G04880.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT2G04880.2 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
zinc ion binding PMID: 17264121
transcription activator activity PMID: 8972846
transcription factor activity PMID:
cellular_component
nucleus PMID:
biological_process
salicylic acid mediated signaling pathway PMID: 17264121
positive regulation of transcription PMID: 8972846
regulation of transcription, DNA-dependent PMID: 10785665
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT2G04880.1 
length: 2028 
miRNA : ath-miR407
length: 21 
 
mfe: -20.2 kcal/mol 
p-value: 0.017020 
 
position  1968 
target 5' C  G    U             U 
           AU GGGA GUAUAUGAUUUGA  
           UG UUUU CAUAUACUAAAUU  
miRNA  3'    G                  U 
 
 
target: AT2G04880.2 
length: 1956 
miRNA : ath-miR407
length: 21 
 
mfe: -20.2 kcal/mol 
p-value: 0.016317 
 
position  1896 
target 5' C  G    U             U 
           AU GGGA GUAUAUGAUUUGA  
           UG UUUU CAUAUACUAAAUU  
miRNA  3'    G                  U 
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_69894
AccessionTaxon
NP_178565 ( AT2G04880 )Arabidopsis thaliana
NP_849936Arabidopsis thaliana
29949.m000123Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PROSITEPS5081122.492105169IPR003657DNA-binding WRKY
PROSITEPS5081122.492105169IPR003657DNA-binding WRKY
PfamPF031065.9e-28110168IPR003657DNA-binding WRKY
SMARTSM007746.3e-35110168IPR003657DNA-binding WRKY
PfamPF031065.5e-28110168IPR003657DNA-binding WRKY
SMARTSM007746.3e-35110168IPR003657DNA-binding WRKY
PROSITEPS5081134.888277342IPR003657DNA-binding WRKY
PfamPF031063.3e-31282340IPR003657DNA-binding WRKY
SMARTSM007742.2e-39282341IPR003657DNA-binding WRKY
PROSITEPS5081134.888301366IPR003657DNA-binding WRKY
PfamPF031063.6e-31306364IPR003657DNA-binding WRKY
SMARTSM007742.2e-39306365IPR003657DNA-binding WRKY