You are querying gene by "AT2G04240".

Locus: AT2G04240 Alias: XERICO

Hormone Evidence Function category Gene Description PMID
gibberellinMutant Hormone signal transduction RING-H2 gene 17933900

Basic gene information ( show / hide contents )

Locus AT2G04240 | Chromosome: 2 | Strand: -
Description RING-H2 gene
Alias
XERICO( alias )
Gene model
AT2G04240.1 | From: 1461627 | To: 1462931
AT2G04240.2 | From: 1461627 | To: 1462934
Sequence
AT2G04240.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT2G04240.2 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
protein binding PMID: 16792696
zinc ion binding PMID:
biological_process
response to osmotic stress PMID: 16792696
response to salt stress PMID: 16792696
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   gibberellin   ]

Genotype PMID Type
xerico 17933900 mutant

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT2G04240.2 
length: 1308 
miRNA : ath-miR869.1
length: 21 
 
mfe: -24.8 kcal/mol 
p-value: 0.014448 
 
position  177 
target 5' U    C          U    A 
           UAGC CCAGAAUUGA UCAG  
           GUUG GGUCUUAACU GGUU  
miRNA  3'      U          U    A 
 
 
Gene1Gene2Positive/NegativeCategoryEnzyme activityEvidencePMID
AT2G04240AT1G30100PositiveotherN/Amutance11532178
AT2G04240AT1G78390PositiveotherN/Amutance11532178
AT2G04240AT2G29090negativeotherN/Amutance15044947
AT2G04240AT3G14440PositiveotherN/Amutance11532178
AT2G04240AT3G24220PositiveotherN/Amutance11532178
AT2G04240AT3G63520PositiveotherN/Amutance11532178
AT2G04240AT4G18350PositiveotherN/Amutance11532178
AT2G04240AT4G19170PositiveotherN/Amutance11532178

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_44466
AccessionTaxon
NP_178507Arabidopsis thaliana
NP_973416 ( AT2G04240 )Arabidopsis thaliana
NP_001062121Oryza sativa Japonica Group
NP_001063473Oryza sativa Japonica Group
30053.m000102Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PfamPF000970.009499999999999996103144IPR018957Zinc finger, C3HC4 RING-type
SMARTSM001847.399999679089142E-7103144IPR001841Zinc finger, RING-type
PROSITEPS500890.0103145IPR001841Zinc finger, RING-type