You are querying gene by "AT2G02560".

Locus: AT2G02560 Alias: ATCAND1

Hormone Evidence Function category Gene Description PMID
auxinMutant Hormone signal transduction Arabidopsis ortholog of human Cullin Associated and Neddylation-Dissociated (CAND1)/TIP120A, a protein recently identified as a cullin-interacting factor 15208392
GeneOntology - response to auxin stimulus 15181201

Basic gene information ( show / hide contents )

Locus AT2G02560 | Chromosome: 2 | Strand: +
Description Arabidopsis ortholog of human Cullin Associated and Neddylation-Dissociated (CAND1)/TIP120A, a protein recently identified as a cullin-interacting factor
Alias
ATCAND1( alias )
CAND1( alias )
ETA2( alias )
HVE( alias )
TIP120( alias )
Gene model
AT2G02560.1 | From: 689787 | To: 697595
AT2G02560.2 | From: 689787 | To: 697595
Sequence
AT2G02560.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT2G02560.2 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
binding PMID:
cellular_component
cellular_component_unknown PMID:
biological_process
xylem and phloem pattern formation PMID: 16943276
response to auxin stimulus PMID: 15181201
vegetative to reproductive phase transition PMID: 15208391
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   auxin   ]

Genotype PMID Type
enhancer of tir1-1 auxin resistance (eta2-1) 15208392 mutant

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT2G02560.1 
length: 4095 
miRNA : ath-miR846
length: 21 
 
mfe: -26.0 kcal/mol 
p-value: 0.011384 
 
position  3079 
target 5' U    C          G    G 
           GUUC AGCACUUCAG UCAG  
           UAAG UCGUGAAGUU AGUU  
miRNA  3' U    U          A      
 
 
target: AT2G02560.2 
length: 4089 
miRNA : ath-miR846
length: 21 
 
mfe: -26.0 kcal/mol 
p-value: 0.011367 
 
position  3073 
target 5' U    C          G    G 
           GUUC AGCACUUCAG UCAG  
           UAAG UCGUGAAGUU AGUU  
miRNA  3' U    U          A      
 
 
Gene1Gene2Positive/NegativeCategoryEnzyme activityEvidencePMID
AT2G02560AT3G62980nondirectionotherN/Amutance17410169
AT2G02560AT5G49980nondirectionotherN/Amutance16920877

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_12400
AccessionTaxon
NP_001030954Arabidopsis thaliana
NP_178360 ( AT2G02560 )Arabidopsis thaliana
NP_001046008Oryza sativa Japonica Group
0300010237Ostreococcus tauri
estExt_Genewise1.C_350171Physcomitrella patens subsp. patens
fgenesh1_pg.scaffold_337000004Physcomitrella patens subsp. patens
29609.m000578Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
Gene3DG3DSA:1.25.10.100.011209IPR011989Armadillo-like helical
SuperFamilySSF483712.2E-661840IPR016024Armadillo-type fold
Gene3DG3DSA:1.25.10.100.011211IPR011989Armadillo-like helical
SuperFamilySSF483711.3E-651842IPR016024Armadillo-type fold
SuperFamilySSF483711.5E-238501078IPR016024Armadillo-type fold
SuperFamilySSF483711.5E-238521080IPR016024Armadillo-type fold
PfamPF086231.0E-5110371201IPR013932TATA-binding protein interacting (TIP20)
PfamPF086231.0E-5110391203IPR013932TATA-binding protein interacting (TIP20)