You are querying gene by "AT1G80840".

Locus: AT1G80840 Alias: ATWRKY40

Hormone Evidence Function category Gene Description PMID
salicylic acidGeneOntology - response to salicylic acid stimulus 12602888

Basic gene information ( show / hide contents )

Locus AT1G80840 | Chromosome: 1 | Strand: +
Description response to salicylic acid stimulus
Alias
ATWRKY40( alias )
WRKY40( alias )
Gene model
AT1G80840.1 | From: 30388583 | To: 30390391
Sequence
AT1G80840.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
transcription factor activity PMID: 16603654
cellular_component
nucleus PMID: 16603654
biological_process
defense response to fungus PMID: 16603654
response to salicylic acid stimulus PMID: 12602888
regulation of transcription, DNA-dependent PMID:
regulation of defense response PMID: 12068113
defense response to bacterium PMID: 12602888
regulation of defense response to virus by host PMID: 17185563
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT1G80840.1 
length: 1195 
miRNA : ath-miR396a
length: 21 
 
mfe: -25.4 kcal/mol 
p-value: 0.015677 
 
position  688 
target 5' A       A            G 
           GGUUCAG GAAGU GUGGAG  
           UCAAGUU UUUCG CACCUU  
miRNA  3' G       C     A        
 
 
target: AT1G80840.1 
length: 1195 
miRNA : ath-miR396b
length: 21 
 
mfe: -25.3 kcal/mol 
p-value: 0.013120 
 
position  687 
target 5' A        A            G 
           AGGUUCAG GAAGU GUGGAG  
           UUCAAGUU UUUCG CACCUU  
miRNA  3'          C     A        
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_51400
AccessionTaxon
NP_178199 ( AT1G80840 )Arabidopsis thaliana
NP_001046094Oryza sativa Japonica Group
NP_001058216Oryza sativa Japonica Group
43951.m000016Ricinus communis
NP_001063184Oryza sativa Japonica Group
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PROSITEPS5081126.773140206IPR003657DNA-binding WRKY
PfamPF031063e-26145204IPR003657DNA-binding WRKY
SMARTSM007742.7e-31145205IPR003657DNA-binding WRKY