You are querying gene by "AT1G79530".

Locus: AT1G79530 Alias: GAPCP-1

Expression of this gene is regulated by hormone (see microarray data for this gene), but no genetic evidence or Gene Ontology evidence yet supported that this is a hormone-related gene.

Basic gene information ( show / hide contents )

Locus AT1G79530 | Chromosome: 1 | Strand: -
Description Encodes one of the chloroplast/plastid localized GAPDH isoforms (GAPCp1/At1g79530 and GAPCp2/At1g16300). gapcp double mutants display a drastic phenotype of arrested root development, dwarfism and sterility. GAPCps are important for the synthesis of serine in roots.
Alias
GAPCP-1( alias )
Gene model
AT1G79530.1 | From: 29920795 | To: 29924127
Sequence
AT1G79530.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
glyceraldehyde-3-phosphate dehydrogenase activity PMID:
cellular_component
plastid PMID: 15533878
biological_process
glycolysis PMID:
KEGG pathway This gene participates in 1 pathways:
Pathway Enzyme
Glycolysis / Gluconeogenesis glyceraldehyde 3-phosphate dehydrogenase
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT1G79530.1 
length: 1745 
miRNA : ath-miR773
length: 21 
 
mfe: -27.6 kcal/mol 
p-value: 0.011726 
 
position  402 
target 5' A               U   C 
           AGACAAAGGUUGGGA CAA  
           UCUGUUUUCGACCUU GUU  
miRNA  3' C               C   U 
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_10093
AccessionTaxon
NP_001117276Arabidopsis thaliana
NP_172750Arabidopsis thaliana
NP_174996Arabidopsis thaliana
NP_566796Arabidopsis thaliana
129019Chlamydomonas reinhardtii
NP_001048847Oryza sativa Japonica Group
NP_001052984Oryza sativa Japonica Group
fgenesh1_pg.C_Chr_01.0001000096Ostreococcus tauri
e_gw1.264.13.1Physcomitrella patens subsp. patens
estExt_Genewise1.C_110236Physcomitrella patens subsp. patens
estExt_Genewise1.C_1350020Physcomitrella patens subsp. patens
estExt_fgenesh1_kg.C_2640003Physcomitrella patens subsp. patens
fgenesh1_pg.scaffold_135000009Physcomitrella patens subsp. patens
fgenesh2_pg.scaffold_86000050Physcomitrella patens subsp. patens
30170.m013796Ricinus communis
NP_173080Arabidopsis thaliana
NP_178071 ( AT1G79530 )Arabidopsis thaliana
140618Chlamydomonas reinhardtii
NP_001046031Oryza sativa Japonica Group
NP_001058309Oryza sativa Japonica Group
30147.m013783Ricinus communis
196443Chlamydomonas reinhardtii
estExt_fgenesh1_pm.C_Chr_10.00010071Ostreococcus tauri
estExt_Genewise1.C_3530015Physcomitrella patens subsp. patens
estExt_fgenesh1_kg.C_30006Physcomitrella patens subsp. patens
30169.m006270Ricinus communis
e_gw1.309.12.1Physcomitrella patens subsp. patens
e_gw1.309.13.1Physcomitrella patens subsp. patens
30131.m006931Ricinus communis
NP_172801Arabidopsis thaliana
NP_187062Arabidopsis thaliana
NP_001047348Oryza sativa Japonica Group
NP_001053139Oryza sativa Japonica Group
NP_001060897Oryza sativa Japonica Group
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PANTHERPTHR108360.087418IPR000173Glyceraldehyde 3-phosphate dehydrogenase subfamily
SMARTSM008461.7999975402237756E-9287236IPR020828Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain
PfamPF000445.000000000000014E-5888236IPR020828Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain
TIGRFAMTIGR015340.088410IPR006424Glyceraldehyde-3-phosphate dehydrogenase, type I
PRINTSPR000784.100013996993149E-48195208IPR020832Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain, subgroup
PRINTSPR000784.100013996993149E-48230248IPR020832Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain, subgroup
PROSITEPS000710.0234241IPR020830Glyceraldehyde 3-phosphate dehydrogenase, active site
PfamPF028006.400000000000042E-70241398IPR020829Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain
PRINTSPR000784.100013996993149E-48257273IPR020832Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain, subgroup
PRINTSPR000784.100013996993149E-48314331IPR020832Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain, subgroup
PRINTSPR000784.100013996993149E-48354369IPR020832Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain, subgroup