You are querying gene by "AT1G79180".

Locus: AT1G79180 Alias: AtMYB63

Hormone Evidence Function category Gene Description PMID
salicylic acidGeneOntology - response to salicylic acid stimulus 16463103
jasmonic acidGeneOntology - response to jasmonic acid stimulus 16463103

Basic gene information ( show / hide contents )

Locus AT1G79180 | Chromosome: 1 | Strand: +
Description response to jasmonic acid stimulus
Alias
AtMYB63( alias )
Gene model
AT1G79180.1 | From: 29791388 | To: 29792695
Sequence
AT1G79180.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
DNA binding PMID:
transcription factor activity PMID: 11118137
biological_process
response to salicylic acid stimulus PMID: 16463103
regulation of transcription, DNA-dependent PMID:
response to jasmonic acid stimulus PMID: 16463103
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT1G79180.1 
length: 1112 
miRNA : ath-miR858
length: 21 
 
mfe: -31.8 kcal/mol 
p-value: 0.000753 
 
position  310 
target 5' C    A               U 
           AGGU GAACAGAUAACGAGA  
           UCCA CUUGUCUGUUGCUUU  
miRNA  3' U    G                 
 
 
target: AT1G79180.1 
length: 1112 
miRNA : ath-miR869.2
length: 21 
 
mfe: -27.8 kcal/mol 
p-value: 0.004055 
 
position  192 
target 5' A                    U 
           UUAACUAUCUUAG GCCAGA  
           AGUUGAUAGAGUU UGGUCU  
miRNA  3' C             G        
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_51300
AccessionTaxon
NP_173098Arabidopsis thaliana
NP_178039 ( AT1G79180 )Arabidopsis thaliana
NP_001047809Oryza sativa Japonica Group
NP_001053726Oryza sativa Japonica Group
30169.m006322Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PANTHERPTHR106414.999965180935813E-1025284IPR015495Myb transcription factor
PROSITEPS512940.01163IPR017930HTH transcriptional regulator, Myb-type, DNA-binding
Gene3DG3DSA:1.10.10.609.89999630839697E-151466IPR012287Homeodomain-related
SMARTSM007172.5999994671899464E-131565IPR001005SANT, DNA-binding
PfamPF002496.000000000000005E-111663IPR014778Myb, DNA-binding
SuperFamilySSF466893.3E-221686IPR009057Homeodomain-like
PROSITEPS512940.064118IPR017930HTH transcriptional regulator, Myb-type, DNA-binding
SMARTSM007174.999998119564294E-1568116IPR001005SANT, DNA-binding
PfamPF002494.599999999999999E-1269114IPR014778Myb, DNA-binding
Gene3DG3DSA:1.10.10.609.599999147161532E-1870118IPR012287Homeodomain-related
SuperFamilySSF466896.1E-1175125IPR009057Homeodomain-like