You are querying gene by "AT1G78240".

Locus: AT1G78240 Alias: QUA2

Hormone Evidence Function category Gene Description PMID
cytokininGeneOntology - response to cytokinin stimulus 12060228

Basic gene information ( show / hide contents )

Locus AT1G78240 | Chromosome: 1 | Strand: -
Description response to cytokinin stimulus
Alias
QUA2( alias )
TSD2( alias )
Gene model
AT1G78240.1 | From: 29437722 | To: 29441377
Sequence
AT1G78240.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
methyltransferase activity PMID: 17425712
cellular_component
Golgi apparatus PMID: 17461780
biological_process
response to cytokinin stimulus PMID: 12060228
shoot development PMID: 12060228
homogalacturonan biosynthetic process PMID: 17425712
root development PMID: 17461780
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT1G78240.1 
length: 2760 
miRNA : ath-miR414
length: 21 
 
mfe: -33.9 kcal/mol 
p-value: 0.000261 
 
position  1050 
target 5' G             G       U 
           GAUGAUGAUGAUG AAGAUGA  
           CUGCUACUACUAC UUCUACU  
miRNA  3' A                       
 
 
target: AT1G78240.1 
length: 2760 
miRNA : ath-miR869.2
length: 21 
 
mfe: -24.4 kcal/mol 
p-value: 0.086231 
 
position  144 
target 5' U      C         A    G 
           UCAACU UCUUGAUAU CAGA  
           AGUUGA AGAGUUGUG GUCU  
miRNA  3' C      U                
 
 
target: AT1G78240.2 
length: 2747 
miRNA : ath-miR414
length: 21 
 
mfe: -33.9 kcal/mol 
p-value: 0.000259 
 
position  1037 
target 5' G             G       U 
           GAUGAUGAUGAUG AAGAUGA  
           CUGCUACUACUAC UUCUACU  
miRNA  3' A                       
 
 
target: AT1G78240.2 
length: 2747 
miRNA : ath-miR869.2
length: 21 
 
mfe: -24.4 kcal/mol 
p-value: 0.085778 
 
position  131 
target 5' U      C         A    G 
           UCAACU UCUUGAUAU CAGA  
           AGUUGA AGAGUUGUG GUCU  
miRNA  3' C      U                
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_27631
AccessionTaxon
NP_001154475 ( AT1G78240 )Arabidopsis thaliana
NP_027543Arabidopsis thaliana
NP_172839Arabidopsis thaliana
NP_177948Arabidopsis thaliana
NP_849657Arabidopsis thaliana
NP_973410Arabidopsis thaliana
NP_973819Arabidopsis thaliana
NP_001048160Oryza sativa Japonica Group
29908.m006045Ricinus communis
30174.m009122Ricinus communis
NP_849656Arabidopsis thaliana
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PfamPF031410.0156676IPR004159Protein of unknown function DUF248, methyltransferase putative