You are querying gene by "AT1G72260".

Locus: AT1G72260 Alias: THI2.1

Hormone Evidence Function category Gene Description PMID
jasmonic acidGeneOntology - jasmonic acid mediated signaling pathway 9824308

Basic gene information ( show / hide contents )

Locus AT1G72260 | Chromosome: 1 | Strand: -
Description jasmonic acid mediated signaling pathway
Alias
THI2.1( alias )
THI2.1.1( alias )
Gene model
AT1G72260.1 | From: 27202095 | To: 27203106
Sequence
AT1G72260.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
molecular_function_unknown PMID: 8552715
toxin receptor binding PMID: 8552715
cellular_component
endomembrane system PMID:
biological_process
jasmonic acid mediated signaling pathway PMID: 9824308
defense response PMID: 9144959
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT1G72260.1 
length: 861 
miRNA : ath-miR831
length: 22 
 
mfe: -28.5 kcal/mol 
p-value: 0.001710 
 
position  809 
target 5' G              A      U 
           AAG AGAGUAUGAG GAGAUC  
           UUC UCUCAUGCUU CUCUAG  
miRNA  3' G   U                 U 
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_37305
AccessionTaxon
NP_176784Arabidopsis thaliana
NP_179105Arabidopsis thaliana
NP_198507Arabidopsis thaliana
NP_565038 ( AT1G72260 )Arabidopsis thaliana
NP_001057732Oryza sativa Japonica Group
NP_001057733Oryza sativa Japonica Group
NP_001057734Oryza sativa Japonica Group
NP_001057737Oryza sativa Japonica Group
DatabaseEntry IDE-valueStartEndInterPro IDDescription
Gene3DG3DSA:3.30.1350.107.800000169384096E-62567IPR001010Thionin
PfamPF003212.1000000000000034E-112567IPR001010Thionin
SuperFamilySSF574297.2E-122567IPR001010Thionin
PROSITEPS002710.02740IPR001010Thionin