You are querying gene by "AT1G69670".

Locus: AT1G69670 Alias: ATCUL3B

Hormone Evidence Function category Gene Description PMID
ethyleneMutant Hormone signal transduction cullin, putative, contains similarity to Cullin homolog 3 (CUL-3) SP:Q13618, GI:3639052 from (Homo sapiens); contains Pfam profile PF00888: Cullin family. Interacts with members of AtBPM family and RBX1 suggesting it is part of an E3 ligase complex involved in RUB modification. 19132085

Basic gene information ( show / hide contents )

Locus AT1G69670 | Chromosome: 1 | Strand: -
Description cullin, putative, contains similarity to Cullin homolog 3 (CUL-3) SP:Q13618, GI:3639052 from (Homo sapiens); contains Pfam profile PF00888: Cullin family. Interacts with members of AtBPM family and RBX1 suggesting it is part of an E3 ligase complex involved in RUB modification.
Alias
ATCUL3B( alias )
CUL3B( alias )
Gene model
AT1G69670.1 | From: 26205694 | To: 26207639
Sequence
AT1G69670.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
protein binding PMID: 15659098
ubiquitin-protein ligase activity PMID:
cellular_component
ubiquitin ligase complex PMID: 11019805
SCF ubiquitin ligase complex PMID: 15659098
biological_process
ubiquitin-dependent protein catabolic process PMID: 11019805
cell cycle PMID:
endosperm development PMID: 16045478
embryonic development ending in seed dormancy PMID: 16045478
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   ethylene   ]

Genotype PMID Type
cul3b-1 19132085 mutant
cul3hyp 19132085 mutant
cin5-3 cul3hyp 19132085 mutant
ein2 cul3hyp 19132085 mutant
ein3 cul3hyp 19132805 mutant

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT1G69670.1 
length: 2337 
miRNA : ath-miR400
length: 21 
 
mfe: -21.3 kcal/mol 
p-value: 0.036137 
 
position  334 
target 5' A     A G            U 
           UGAUU G GAUAUUCUCAUG  
           ACUGA U UUAUGAGAGUAU  
miRNA  3' C     A A              
 
 
target: AT1G69670.1 
length: 2337 
miRNA : ath-miR858
length: 21 
 
mfe: -29.7 kcal/mol 
p-value: 0.005637 
 
position  1740 
target 5' A   A             U    U 
           GAG UCGAACAGGCAAC GAAA  
           UUC AGCUUGUCUGUUG CUUU  
miRNA  3'     C                    
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_12296
AccessionTaxon
NP_174005Arabidopsis thaliana
NP_177125 ( AT1G69670 )Arabidopsis thaliana
127081Chlamydomonas reinhardtii
NP_001048114Oryza sativa Japonica Group
NP_001054047Oryza sativa Japonica Group
NP_001061094Oryza sativa Japonica Group
e_gw1.03.00.68.1Ostreococcus tauri
e_gw1.311.53.1Physcomitrella patens subsp. patens
estExt_fgenesh1_pm.C_310036Physcomitrella patens subsp. patens
29813.m001468Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
SuperFamilySSF747882.1E-10925376IPR016159Cullin repeat-like-containing domain
PfamPF008880.029630IPR001373Cullin, N-terminal
SuperFamilySSF756324.1E-86368641IPR016158Cullin homology
PROSITEPS500690.0374601IPR016158Cullin homology
SMARTSM001822.2999842048856963E-67404550IPR016158Cullin homology
Gene3DG3DSA:1.10.10.105.099998824399778E-4561598IPR011991Winged helix-turn-helix transcription repressor DNA-binding
Gene3DG3DSA:1.10.10.105.799996538547806E-32627732IPR011991Winged helix-turn-helix transcription repressor DNA-binding
PfamPF105572.900000000000006E-24659725IPR019559Cullin protein, neddylation domain
SMARTSM008845.200000890033361E-33659726IPR019559Cullin protein, neddylation domain