You are querying gene by "AT1G64520".

Locus: AT1G64520 Alias: RPN12a

Hormone Evidence Function category Gene Description PMID
CytokininTransgenic Hormone signal transduction Regulatory Particle non-ATPase 12a (RPN12a); FUNCTIONS IN: peptidase activity; INVOLVED IN: in 14 processes; LOCATED IN: proteasome complex, nucleus, proteasome regulatory particle, lid subcomplex, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 26S proteasome non-ATPase regulatory subunit Rpn12 (InterPro:IPR006746), SAC3/GANP/Nin1/mts3/eIF-3 p25 (InterPro:IPR005062); BEST Arabidopsis thaliana protein match is: RPN12b (Regulatory Particle Non-ATPase 12b); peptidase (TAIR:AT5G42040.1); Has 353 Blast hits to 353 proteins in 144 species: Archae - 0; Bacteria - 0; Metazoa - 167; Fungi - 84; Plants - 39; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink). 19812900
cytokininGeneOntology - response to cytokinin stimulus 11826296
auxinGeneOntology - response to auxin stimulus 11826296

Basic gene information ( show / hide contents )

Hormone-related mutants or transgenic plants associated with this gene

[   cytokinin   ]

Genotype PMID Type
35:RNAi-RPN12a 19812900 transgenic

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT1G64520.1 
length: 1079 
miRNA : ath-miR156a
length: 20 
 
mfe: -27.4 kcal/mol 
p-value: 0.007894 
 
position  898 
target 5' U  U                 U 
           UG CUC UUCUCUUCUGUUA  
           AC GAG GAGAGAAGACAGU  
miRNA  3' C      U               
 
 
target: AT1G64520.1 
length: 1079 
miRNA : ath-miR156b
length: 20 
 
mfe: -27.4 kcal/mol 
p-value: 0.005513 
 
position  898 
target 5' U  U                 U 
           UG CUC UUCUCUUCUGUUA  
           AC GAG GAGAGAAGACAGU  
miRNA  3' C      U               
 
 
target: AT1G64520.1 
length: 1079 
miRNA : ath-miR156c
length: 20 
 
mfe: -27.4 kcal/mol 
p-value: 0.005128 
 
position  898 
target 5' U  U                 U 
           UG CUC UUCUCUUCUGUUA  
           AC GAG GAGAGAAGACAGU  
miRNA  3' C      U               
 
 
target: AT1G64520.1 
length: 1079 
miRNA : ath-miR156d
length: 20 
 
mfe: -27.4 kcal/mol 
p-value: 0.006623 
 
position  898 
target 5' U  U                 U 
           UG CUC UUCUCUUCUGUUA  
           AC GAG GAGAGAAGACAGU  
miRNA  3' C      U               
 
 
target: AT1G64520.1 
length: 1079 
miRNA : ath-miR156e
length: 20 
 
mfe: -27.4 kcal/mol 
p-value: 0.006729 
 
position  898 
target 5' U  U                 U 
           UG CUC UUCUCUUCUGUUA  
           AC GAG GAGAGAAGACAGU  
miRNA  3' C      U               
 
 
target: AT1G64520.1 
length: 1079 
miRNA : ath-miR156f
length: 20 
 
mfe: -27.4 kcal/mol 
p-value: 0.006394 
 
position  898 
target 5' U  U                 U 
           UG CUC UUCUCUUCUGUUA  
           AC GAG GAGAGAAGACAGU  
miRNA  3' C      U               
 
 
target: AT1G64520.1 
length: 1079 
miRNA : ath-miR156g
length: 20 
 
mfe: -26.8 kcal/mol 
p-value: 0.007624 
 
position  898 
target 5' U  U                A 
           UG CUC UUCUCUUCUGUU  
           AC GAG GAGAGAAGACAG  
miRNA  3' C      U            C 
 
 
target: AT1G64520.1 
length: 1079 
miRNA : ath-miR773
length: 21 
 
mfe: -25.8 kcal/mol 
p-value: 0.015054 
 
position  623 
target 5' A     G   U       U    C 
           GAGAU AAA AGCUGGA GCAG  
           CUCUG UUU UCGACCU CGUU  
miRNA  3'                   U    U 
 
 
Gene1Gene2Positive/NegativeCategoryEnzyme activityEvidencePMID
AT1G64520AT1G04240negativeotherN/Amolecular12671091
AT1G64520AT1G04240negativeprotein degradationN/AGO/others11826296
AT1G64520AT1G04550negativeotherN/Amolecular12671091
AT1G64520AT1G15580negativeotherN/Amolecular12671091
AT1G64520AT2G32410negativeotherN/Amolecular12671091
AT1G64520AT2G36270negativeotherN/Amutance12671091
AT1G64520AT2G38120negativeotherN/Amolecular12671091
AT1G64520AT3G15540negativeotherN/Amolecular12671091
AT1G64520AT3G48750negativeotherN/Amutance12671091
AT1G64520AT4G14550negativeotherN/Amolecular12671091
AT1G64520AT4G14560negativeotherN/Amolecular12671091
AT1G64520AT5G25890negativeotherN/Amolecular12671091
AT1G64520AT5G43700negativeotherN/Amolecular12671091
AT1G64520AUX3negativeotherN/Amolecular12671091
AT1G64520IAAnegativeotherN/Amutance12671091
AT1G64520iPnegativeotherN/Amutance12671091

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_11393
AccessionTaxon
NP_176633 ( AT1G64520 )Arabidopsis thaliana
115411Chlamydomonas reinhardtii
NP_001059500Oryza sativa Japonica Group
e_gw1.09.00.363.1Ostreococcus tauri
estExt_fgenesh1_pg.C_480051Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_680033Physcomitrella patens subsp. patens
30068.m002522Ricinus communis
NP_199019Arabidopsis thaliana
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PANTHERPTHR123879.099924325423257E-1281267IPR00674626S proteasome non-ATPase regulatory subunit Rpn12
PfamPF033998.400000000000007E-2827209IPR005062SAC3/GANP/Nin1/mts3/eIF-3 p25