You are querying gene by "AT1G63650".

Locus: AT1G63650 Alias: ATMYC-2

Hormone Evidence Function category Gene Description PMID
Jasmonic acidMutant Hormone signal transduction Mutant has reduced trichomes, anthocyanin, and seed coat mucilage and abnormally patterned stomates. Encodes a bHLH Transcription Factor 1. The protein is functionally redundant with GL3 and TT8 and interacts with TTG1, the myb proteins GL1, PAP1 and 2, CPC and TRY, and it will form heterodimers with GL3. Expression in N (non-hair cell forming) cell layers is negatively regulated by WER. Expression in H cells (hair cell forming) is promoted by CPC/TRY. 19234066

Basic gene information ( show / hide contents )

Locus AT1G63650 | Chromosome: 1 | Strand: +
Description Mutant has reduced trichomes, anthocyanin, and seed coat mucilage and abnormally patterned stomates. Encodes a bHLH Transcription Factor 1. The protein is functionally redundant with GL3 and TT8 and interacts with TTG1, the myb proteins GL1, PAP1 and 2, CPC and TRY, and it will form heterodimers with GL3. Expression in N (non-hair cell forming) cell layers is negatively regulated by WER. Expression in H cells (hair cell forming) is promoted by CPC/TRY.
Alias
ATMYC-2( alias )
EGL1( alias )
EGL3( alias )
Gene model
AT1G63650.1 | From: 23603316 | To: 23606565
AT1G63650.2 | From: 23603168 | To: 23606565
Sequence
AT1G63650.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT1G63650.2 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
DNA binding PMID:
transcription factor activity PMID: 12917293
cellular_component
nucleus PMID:
biological_process
regulation of transcription PMID: 11118137
epidermal cell fate specification PMID: 12917293
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   jasmonic acid   ]

Genotype PMID Type
gl3-11 egl3-7 19234066 mutant
gl3-11 gl1-2 19234066 mutant
egl3-7 gl1-2 19234066 mutant

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT1G63650.1 
length: 2115 
miRNA : ath-miR414
length: 21 
 
mfe: -23.8 kcal/mol 
p-value: 0.018974 
 
position  1562 
target 5' G   A C           G  A 
           GAU A GAUGAUGAAGA GA  
           CUG U CUACUACUUCU CU  
miRNA  3' A   C A           A    
 
 
target: AT1G63650.1 
length: 2115 
miRNA : ath-miR847
length: 21 
 
mfe: -29.6 kcal/mol 
p-value: 0.009875 
 
position  1628 
target 5' A  G   A              U 
           CA CAA AGGAAGGGGAGUGA  
           GU GUU UUCUUCUCCUCACU  
miRNA  3'    A   C                
 
 
target: AT1G63650.2 
length: 2037 
miRNA : ath-miR414
length: 21 
 
mfe: -23.8 kcal/mol 
p-value: 0.018258 
 
position  1484 
target 5' G   A C           G  A 
           GAU A GAUGAUGAAGA GA  
           CUG U CUACUACUUCU CU  
miRNA  3' A   C A           A    
 
 
target: AT1G63650.2 
length: 2037 
miRNA : ath-miR847
length: 21 
 
mfe: -29.6 kcal/mol 
p-value: 0.009557 
 
position  1550 
target 5' A  G   A              U 
           CA CAA AGGAAGGGGAGUGA  
           GU GUU UUCUUCUCCUCACU  
miRNA  3'    A   C                
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_23270
AccessionTaxon
NP_176552Arabidopsis thaliana
NP_680372Arabidopsis thaliana
NP_974080 ( AT1G63650 )Arabidopsis thaliana
NP_001053530Oryza sativa Japonica Group
NP_001053532Oryza sativa Japonica Group
NP_001067642Oryza sativa Japonica Group
e_gw1.167.42.1Physcomitrella patens subsp. patens
e_gw1.31.140.1Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_2660013Physcomitrella patens subsp. patens
30174.m009029Ricinus communis
NP_001043391Oryza sativa Japonica Group
NP_001043392Oryza sativa Japonica Group
NP_001053531Oryza sativa Japonica Group
e_gw1.31.270.1Physcomitrella patens subsp. patens
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PROSITEPS5088813.807390451IPR001092Helix-loop-helix DNA-binding domain
SuperFamilySSF474599.4e-17391468IPR011598Helix-loop-helix DNA-binding
Gene3DG3DSA:4.10.280.106.3e-10397481IPR011598Helix-loop-helix DNA-binding
PfamPF000105.1e-12405451IPR001092Helix-loop-helix DNA-binding domain
SMARTSM003537.7e-17407456IPR001092Helix-loop-helix DNA-binding domain