You are querying gene by "AT1G62830".

Locus: AT1G62830 Alias: LDL1

Hormone Evidence Function category Gene Description PMID
salicylic acidMutant Hormone signal transduction Encodes a homolog of human Lysine-Specific Demethylase1. Involved in H3K4 methylation of target genes including the flowering time loci FLC and FWA. Located in nucleus. Negatively regulates root elongation. Involved in repression of LRP1 via histone deacetylation. 20456049

Basic gene information ( show / hide contents )

Locus AT1G62830 | Chromosome: 1 | Strand: -
Description Encodes a homolog of human Lysine-Specific Demethylase1. Involved in H3K4 methylation of target genes including the flowering time loci FLC and FWA. Located in nucleus. Negatively regulates root elongation. Involved in repression of LRP1 via histone deacetylation.
Alias
LDL1( alias )
Gene model
AT1G62830.1 | From: 23268155 | To: 23270867
Sequence
AT1G62830.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
amine oxidase activity PMID:
cellular_component
cellular_component_unknown PMID:
biological_process
electron transport PMID:
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   salicylic acid   ]

Genotype PMID Type
lsd1-3 20456049 mutant

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT1G62830.1 
length: 2713 
miRNA : ath-miR839
length: 21 
 
mfe: -29.0 kcal/mol 
p-value: 0.004103 
 
position  949 
target 5' C                    A 
           GGAA GAUGAAAGG UGGUG  
           CCUU CUACUUUCC ACCAU  
miRNA  3' C    G         A       
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_15170
AccessionTaxon
NP_176471 ( AT1G62830 )Arabidopsis thaliana
NP_187650Arabidopsis thaliana
NP_187981Arabidopsis thaliana
NP_001048161Oryza sativa Japonica Group
NP_001053545Oryza sativa Japonica Group
NP_001060976Oryza sativa Japonica Group
29080.m000176Ricinus communis
29745.m000367Ricinus communis
30091.m000234Ricinus communis
e_gw1.20.00.5.1Ostreococcus tauri
estExt_Genewise1.C_1450051Physcomitrella patens subsp. patens
estExt_Genewise1.C_480072Physcomitrella patens subsp. patens
e_gw1.38.83.1Physcomitrella patens subsp. patens
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PROSITEPS509340.0154255IPR007526SWIRM
PfamPF044331.7000000000000003E-14162246IPR007526SWIRM
PfamPF015931.6999999999999846E-104275704IPR002937Amine oxidase