You are querying gene by "AT1G59750".

Locus: AT1G59750 Alias: ARF1

Hormone Evidence Function category Gene Description PMID
auxinMutant Hormone signal transduction transcription factor ( repressor) 16176952
GeneOntology - response to auxin stimulus 9188533

Basic gene information ( show / hide contents )

Locus AT1G59750 | Chromosome: 1 | Strand: +
Description transcription factor ( repressor)
Alias
ARF1( alias )
Gene model
AT1G59750.1 | From: 21983049 | To: 21988078
AT1G59750.2 | From: 21983049 | To: 21988075
AT1G59750.3 | From: 21983049 | To: 21988098
Sequence
AT1G59750.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT1G59750.2 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT1G59750.3 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
DNA binding PMID: 10476078
transcription factor activity PMID: 11118137
cellular_component
nucleus PMID: 10318972
biological_process
negative regulation of transcription PMID: 16176952
response to auxin stimulus PMID: 9188533
leaf senescence PMID: 16176952
regulation of transcription, DNA-dependent PMID: 9188533
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   auxin   ]

Genotype PMID Type
arf1-4 16176952 mutant
arf1-5 arf2-8 16339187 mutant
arf1-5 16176952 mutant

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT1G59750.1 
length: 2484 
miRNA : ath-miR400
length: 21 
 
mfe: -28.7 kcal/mol 
p-value: 0.000563 
 
position  872 
target 5' A      G              U 
           GUGGCU GUGAUGCUUUCAUA  
           CACUGA UAUUAUGAGAGUAU  
miRNA  3'        A                
 
 
target: AT1G59750.2 
length: 2472 
miRNA : ath-miR400
length: 21 
 
mfe: -28.7 kcal/mol 
p-value: 0.000559 
 
position  872 
target 5' A      G              U 
           GUGGCU GUGAUGCUUUCAUA  
           CACUGA UAUUAUGAGAGUAU  
miRNA  3'        A                
 
 
target: AT1G59750.3 
length: 2308 
miRNA : ath-miR400
length: 21 
 
mfe: -28.7 kcal/mol 
p-value: 0.000503 
 
position  676 
target 5' A      G              U 
           GUGGCU GUGAUGCUUUCAUA  
           CACUGA UAUUAUGAGAGUAU  
miRNA  3'        A                
 
 
Gene1Gene2Positive/NegativeCategoryEnzyme activityEvidencePMID
AT1G59750AT1G74740PositivetransciptN/Amolecular18599455
AT1G59750AT2G14610negativetransciptN/Abiochem17276977
AT1G59750AT4G30610PositivetransciptN/AGO/othersN/A
AT1G59750AT5G18560PositivetransciptN/Amutance17630277
AT1G59750CBF/DREBnegativetransciptN/Abiochem17276977

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_16783
AccessionTaxon
NP_001031208 ( AT1G59750 )Arabidopsis thaliana
NP_176184Arabidopsis thaliana
NP_849830Arabidopsis thaliana
NP_001047137Oryza sativa Japonica Group
NP_001052879Oryza sativa Japonica Group
e_gw1.64.107.1Physcomitrella patens subsp. patens
estExt_Genewise1.C_140304Physcomitrella patens subsp. patens
estExt_Genewise1.C_2800001Physcomitrella patens subsp. patens
gw1.341.65.1Physcomitrella patens subsp. patens
29609.m000586Ricinus communis
29609.m000587Ricinus communis
29742.m001397Ricinus communis
30068.m002516Ricinus communis
NP_001031548Arabidopsis thaliana
NP_001031706Arabidopsis thaliana
NP_182176Arabidopsis thaliana
NP_194129Arabidopsis thaliana
NP_567119Arabidopsis thaliana
NP_973701Arabidopsis thaliana
NP_201006Arabidopsis thaliana
NP_851244Arabidopsis thaliana
NP_974980Arabidopsis thaliana
NP_001045270Oryza sativa Japonica Group
NP_001066765Oryza sativa Japonica Group
NP_001067988Oryza sativa Japonica Group
30128.m008545Ricinus communis
30147.m014418Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PfamPF023626.400000000000012E-18124225IPR003340Transcriptional factor B3
PROSITEPS508630.0124226IPR003340Transcriptional factor B3
PfamPF023628.1e-21124225IPR003340Transcriptional factor B3
PROSITEPS5086310.518124226IPR003340Transcriptional factor B3
PfamPF065071.9000000000000047E-30250332IPR010525Auxin response factor
PfamPF065072.5e-33250332IPR010525Auxin response factor
PfamPF023095.000000000000014E-27450630IPR003311AUX/IAA protein
PfamPF023096.4e-30453633IPR003311AUX/IAA protein
PROSITEPS509620.0540622IPR011525Aux/IAA-ARF-dimerisation
PROSITEPS5096227.745543625IPR011525Aux/IAA-ARF-dimerisation