You are querying gene by "AT1G59500".

Locus: AT1G59500 Alias: GH3.4

Hormone Evidence Function category Gene Description PMID
auxinGeneOntology - response to auxin stimulus

Basic gene information ( show / hide contents )

Locus AT1G59500 | Chromosome: 1 | Strand: -
Description response to auxin stimulus
Alias
GH3.4( alias )
Gene model
AT1G59500.1 | From: 21858158 | To: 21860279
Sequence
AT1G59500.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
indole-3-acetic acid amido synthetase PMID: 15659623
cellular_component
cellular_component_unknown PMID:
biological_process
response to auxin stimulus PMID:
auxin homeostasis PMID: 15659623
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT1G59500.1 
length: 1794 
miRNA : ath-miR170
length: 21 
 
mfe: -24.6 kcal/mol 
p-value: 0.031187 
 
position  158 
target 5' A    C   A           U 
           AUAU UGA ACGGUUCGAUC  
           UAUA ACU UGCCGAGUUAG  
miRNA  3' C        G           U 
 
 
target: AT1G59500.1 
length: 1794 
miRNA : ath-miR830*
length: 22 
 
mfe: -24.1 kcal/mol 
p-value: 0.007455 
 
position  1514 
target 5' U    A  U            U   G 
           GGCU AG GCUGUUUGGAGA GGA  
           UUGG UU UGAUAAACCUCU UCU  
miRNA  3'      A                     
 
 
target: AT1G59500.1 
length: 1794 
miRNA : ath-miR844
length: 21 
 
mfe: -26.4 kcal/mol 
p-value: 0.003206 
 
position  388 
target 5' C     U           C   U 
           AGCUU UAGGCAAUCUU UCA  
           UCGAA AUUCGUUAGAA GGU  
miRNA  3'       U           U     
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_14809
AccessionTaxon
NP_001031874Arabidopsis thaliana
NP_174134Arabidopsis thaliana
NP_196839Arabidopsis thaliana
NP_196840Arabidopsis thaliana
NP_196841Arabidopsis thaliana
NP_196842Arabidopsis thaliana
NP_001044345Oryza sativa Japonica Group
NP_001044467Oryza sativa Japonica Group
NP_001055967Oryza sativa Japonica Group
NP_001060084Oryza sativa Japonica Group
NP_001060085Oryza sativa Japonica Group
NP_001060163Oryza sativa Japonica Group
27533.m000079Ricinus communis
28152.m000872Ricinus communis
29970.m001008Ricinus communis
30128.m008575Ricinus communis
30129.m000366Ricinus communis
NP_173729Arabidopsis thaliana
NP_175299Arabidopsis thaliana
NP_196836Arabidopsis thaliana
NP_199960Arabidopsis thaliana
NP_176159 ( AT1G59500 )Arabidopsis thaliana
NP_179101Arabidopsis thaliana
NP_179898Arabidopsis thaliana
NP_182296Arabidopsis thaliana
NP_194456Arabidopsis thaliana
NP_195455Arabidopsis thaliana
NP_200262Arabidopsis thaliana
NP_849718Arabidopsis thaliana
estExt_Genewise1.C_3230045Physcomitrella patens subsp. patens
NP_175300Arabidopsis thaliana
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PfamPF033210.022570IPR004993GH3 auxin-responsive promoter