You are querying gene by "AT1G56070".

Locus: AT1G56070 Alias: AT1G56075.1

Hormone Evidence Function category Gene Description PMID
abscisic acidMutant Hormone signal transduction LOW EXPRESSION OF OSMOTICALLY RESPONSE GENES1; encodes a translation elongation factor 2-like protein that is involved in cold-induced translation. 12032361

Basic gene information ( show / hide contents )

Locus AT1G56070 | Chromosome: 1 | Strand: -
Description LOW EXPRESSION OF OSMOTICALLY RESPONSE GENES1; encodes a translation elongation factor 2-like protein that is involved in cold-induced translation.
Alias
AT1G56075.1( alias )
LOS1( alias )
Gene model
AT1G56070.1 | From: 20971595 | To: 20975407
Sequence
AT1G56070.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
translation factor activity, nucleic acid binding PMID:
translation elongation factor activity PMID:
biological_process
response to cold PMID: 12032361
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   abscisic acid   ]

Genotype PMID Type
los1-1 12032361 mutant

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT1G56070.1 
length: 2958 
miRNA : ath-miR836
length: 24 
 
mfe: -32.0 kcal/mol 
p-value: 0.008804 
 
position  2370 
target 5' A        C            A  C 
           CACGUGUU GAGGAGAUGCAG GG  
           GUGCGUAG UUCCUUUGUGUC CU  
miRNA  3' G        U                 
 
 
target: AT1G56070.1 
length: 2958 
miRNA : ath-miR852
length: 21 
 
mfe: -26.4 kcal/mol 
p-value: 0.016929 
 
position  729 
target 5' G       U           G 
           GGAACUG GGCGUUU UCU  
           UCUUGAU CCGCGAA AGA  
miRNA  3' G       U       U   A 
 
 
Gene1Gene2Positive/NegativeCategoryEnzyme activityEvidencePMID
AT1G56070AT1G20440negativeotherN/Amutance12032361
AT1G56070AT2G42540negativetransciptN/Amolecular1203236
AT1G56070AT3G26744negativetransciptN/Amolecular1203236

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_10360
AccessionTaxon
NP_001154611Arabidopsis thaliana
NP_849818 ( AT1G56070 )Arabidopsis thaliana
24524Chlamydomonas reinhardtii
NP_001044104Oryza sativa Japonica Group
NP_001044211Oryza sativa Japonica Group
NP_001046972Oryza sativa Japonica Group
NP_001052057Oryza sativa Japonica Group
estExt_gwp_GeneWisePlus.C_Chr_14.00010027Ostreococcus tauri
estExt_Genewise1.C_1380094Physcomitrella patens subsp. patens
estExt_Genewise1.C_1380097Physcomitrella patens subsp. patens
estExt_Genewise1.C_34950001Physcomitrella patens subsp. patens
estExt_Genewise1.C_4310001Physcomitrella patens subsp. patens
estExt_fgenesh1_pm.C_4310002Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_1380085Physcomitrella patens subsp. patens
29923.m000812Ricinus communis
30169.m006349Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PfamPF000097.200000000000025E-5717341IPR000795Protein synthesis factor, GTP-binding
PRINTSPR003154.000003008698826E-142134IPR000795Protein synthesis factor, GTP-binding
PROSITEPS003010.05873IPR000795Protein synthesis factor, GTP-binding
PRINTSPR003154.000003008698826E-146573IPR000795Protein synthesis factor, GTP-binding
PRINTSPR003154.000003008698826E-14101111IPR000795Protein synthesis factor, GTP-binding
PRINTSPR003154.000003008698826E-14117128IPR000795Protein synthesis factor, GTP-binding
PRINTSPR003154.000003008698826E-14153162IPR000795Protein synthesis factor, GTP-binding
SuperFamilySSF504471.3E-41342479IPR009000Translation elongation/initiation factor/Ribosomal, beta-barrel
PfamPF031441.4E-8393468IPR004161Translation elongation factor EFTu/EF1A, domain 2
SuperFamilySSF549809.8E-21482561IPR009022Elongation factor G/III/V
SuperFamilySSF542116.2E-73562726IPR020568Ribosomal protein S5 domain 2-type fold
Gene3DG3DSA:3.30.230.101.5000096574878444E-80563761IPR014721Ribosomal protein S5 domain 2-type fold, subgroup
SMARTSM008892.9000035467798053E-24606722IPR005517Translation elongation factor EFG/EF2, domain IV
PfamPF037646.900000000000011E-34609722IPR005517Translation elongation factor EFG/EF2, domain IV
PfamPF006791.6000000000000007E-17724811IPR000640Translation elongation factor EFG/EF2, C-terminal
SMARTSM008382.0999980669153363E-16724813IPR000640Translation elongation factor EFG/EF2, C-terminal
SuperFamilySSF549807.5E-32727843IPR009022Elongation factor G/III/V
Gene3DG3DSA:3.30.230.103.7999986264476396E-12786843IPR014721Ribosomal protein S5 domain 2-type fold, subgroup