You are querying gene by "AT1G54490".

Locus: AT1G54490 Alias: AIN1

Hormone Evidence Function category Gene Description PMID
ethyleneMutant Hormone signal transduction ETHYLENE-INSENSITIVE5 (EIN5);5'-3' exonuclease activity; exonuclease activity.;nucleic acid binding. 7768447 16920797
GeneOntology - ethylene mediated signaling pathway

Basic gene information ( show / hide contents )

Locus AT1G54490 | Chromosome: 1 | Strand: +
Description ETHYLENE-INSENSITIVE5 (EIN5);5'-3' exonuclease activity; exonuclease activity.;nucleic acid binding.
AIN1( alias )
EIN5( alias )
XRN4( alias )
Gene model
AT1G54490.1 | From: 20353858 | To: 20360583
AT1G54490.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
5'-3' exonuclease activity PMID:
5'-3' exoribonuclease activity PMID: 15528448
nucleic acid binding PMID:
nucleus PMID: 11106401
unidimensional cell growth PMID:
regulation of gene expression, epigenetic PMID: 16920797
ethylene mediated signaling pathway PMID:
deadenylation-independent decapping of nuclear-transcribed mRNA PMID: 15528448
response to 1-Aminocyclopropane-1-carboxylic Acid PMID:
response to ethylene stimulus PMID:
nuclear-transcribed mRNA catabolic process, exonucleolytic PMID: 15528448
gravitropism PMID:
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   ethylene   ]

Genotype PMID Type
ein5 ctr1 16920797 mutant
ein5-1 16920797 mutant
ein5-1 ebf1-1 16920797 mutant
ein5-1 ebf2-1 16920797 mutant
ein5-1 eir1-2 7768447 mutant
ein5-2 7768447 mutant
ein5-1 ctr1-1 7768447 mutant
ein5-1 etr1-2 7768447 mutant
ein7 7768447 mutant
ctr1-1 ein7 7768447 mutant

Microarray data for this gene

Hormone treatment related datasets  
Abiotic stress treatment related datasets (in root)  
Abiotic stress treatment related datasets (in shoot)  
Development related datasets  

miRNA interaction information for this gene

No miRNA interaction information for this gene.

Gene1Gene2Positive/NegativeCategoryEnzyme activityEvidencePMID
AT1G54490AT2G25490negativeRNA degradationN/Amutance16920797
AT1G54490AT5G25350negativeRNA degradationN/Amutance16920797

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_10250
NP_199069Arabidopsis thaliana
NP_565114Arabidopsis thaliana
NP_001044947Oryza sativa Japonica Group
NP_001051542Oryza sativa Japonica Group
estExt_gwp_GeneWisePlus.C_Chr_06.00010275Ostreococcus tauri
estExt_gwp_gw1.C_5090016Physcomitrella patens subsp. patens
30055.m001624Ricinus communis
30073.m002213Ricinus communis
30170.m014167Ricinus communis
95232Chlamydomonas reinhardtii
e_gw1. tauri
NP_175851 ( AT1G54490 )Arabidopsis thaliana
30128.m008637Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PIRPIRSF0372390.01901IPR0171515'-3' exoribonuclease 2
PfamPF031591.2000000000000144E-1061255IPR004859Putative 5-3 exonuclease
PfamPF000980.001264279IPR001878Zinc finger, CCHC-type
SMARTSM003433.899998617952183E-5264280IPR001878Zinc finger, CCHC-type
PROSITEPS501580.0264279IPR001878Zinc finger, CCHC-type