You are querying gene by "AT1G54490".

Locus: AT1G54490 Alias: AIN1

Hormone Evidence Function category Gene Description PMID
ethyleneMutant Hormone signal transduction ETHYLENE-INSENSITIVE5 (EIN5);5'-3' exonuclease activity; exonuclease activity.;nucleic acid binding. 7768447 16920797
GeneOntology - ethylene mediated signaling pathway

Basic gene information ( show / hide contents )

Locus AT1G54490 | Chromosome: 1 | Strand: +
Description ETHYLENE-INSENSITIVE5 (EIN5);5'-3' exonuclease activity; exonuclease activity.;nucleic acid binding.
Alias
AIN1( alias )
EIN5( alias )
XRN4( alias )
Gene model
AT1G54490.1 | From: 20353858 | To: 20360583
Sequence
AT1G54490.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
5'-3' exonuclease activity PMID:
5'-3' exoribonuclease activity PMID: 15528448
nucleic acid binding PMID:
cellular_component
nucleus PMID: 11106401
biological_process
unidimensional cell growth PMID:
regulation of gene expression, epigenetic PMID: 16920797
ethylene mediated signaling pathway PMID:
deadenylation-independent decapping of nuclear-transcribed mRNA PMID: 15528448
response to 1-Aminocyclopropane-1-carboxylic Acid PMID:
response to ethylene stimulus PMID:
nuclear-transcribed mRNA catabolic process, exonucleolytic PMID: 15528448
gravitropism PMID:
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   ethylene   ]

Genotype PMID Type
ein5 ctr1 16920797 mutant
ein5-1 16920797 mutant
ein5-1 ebf1-1 16920797 mutant
ein5-1 ebf2-1 16920797 mutant
ein5-1 eir1-2 7768447 mutant
ein5-2 7768447 mutant
ein5-1 ctr1-1 7768447 mutant
ein5-1 etr1-2 7768447 mutant
ein7 7768447 mutant
ctr1-1 ein7 7768447 mutant

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

No miRNA interaction information for this gene.

Gene1Gene2Positive/NegativeCategoryEnzyme activityEvidencePMID
AT1G54490AT2G25490negativeRNA degradationN/Amutance16920797
AT1G54490AT5G25350negativeRNA degradationN/Amutance16920797

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_10250
AccessionTaxon
NP_199069Arabidopsis thaliana
NP_565114Arabidopsis thaliana
NP_001044947Oryza sativa Japonica Group
NP_001051542Oryza sativa Japonica Group
estExt_gwp_GeneWisePlus.C_Chr_06.00010275Ostreococcus tauri
estExt_gwp_gw1.C_5090016Physcomitrella patens subsp. patens
30055.m001624Ricinus communis
30073.m002213Ricinus communis
30170.m014167Ricinus communis
95232Chlamydomonas reinhardtii
e_gw1.06.00.127.1Ostreococcus tauri
NP_175851 ( AT1G54490 )Arabidopsis thaliana
30128.m008637Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PIRPIRSF0372390.01901IPR0171515'-3' exoribonuclease 2
PfamPF031591.2000000000000144E-1061255IPR004859Putative 5-3 exonuclease
PfamPF000980.001264279IPR001878Zinc finger, CCHC-type
SMARTSM003433.899998617952183E-5264280IPR001878Zinc finger, CCHC-type
PROSITEPS501580.0264279IPR001878Zinc finger, CCHC-type