You are querying gene by "AT1G54270".

Locus: AT1G54270 Alias: EIF4A-2

Expression of this gene is regulated by hormone (see microarray data for this gene), but no genetic evidence or Gene Ontology evidence yet supported that this is a hormone-related gene.

Basic gene information ( show / hide contents )

Locus AT1G54270 | Chromosome: 1 | Strand: +
Description member of eIF4A - eukaryotic initiation factor 4A
Alias
EIF4A-2( alias )
Gene model
AT1G54270.1 | From: 20263359 | To: 20265933
Sequence
AT1G54270.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
translation initiation factor activity PMID:
ATP-dependent helicase activity PMID:
cellular_component
cellular_component_unknown PMID:
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT1G54270.1 
length: 1759 
miRNA : ath-miR824
length: 21 
 
mfe: -25.0 kcal/mol 
p-value: 0.027436 
 
position  485 
target 5' A                   U 
           CCCUUUU GCAAG GGUCU  
           GGGAAGA UGUUU CCAGA  
miRNA  3' A       G     A     U 
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_10414
AccessionTaxon
NP_001030693Arabidopsis thaliana
NP_001078148Arabidopsis thaliana
NP_175829 ( AT1G54270 )Arabidopsis thaliana
NP_177417Arabidopsis thaliana
NP_566469Arabidopsis thaliana
NP_001045878Oryza sativa Japonica Group
NP_001058481Oryza sativa Japonica Group
estExt_gwp_GeneWisePlus.C_Chr_07.00010433Ostreococcus tauri
e_gw1.31.242.1Physcomitrella patens subsp. patens
estExt_Genewise1.C_3830001Physcomitrella patens subsp. patens
estExt_fgenesh1_pm.C_1360003Physcomitrella patens subsp. patens
estExt_fgenesh2_pg.C_770006Physcomitrella patens subsp. patens
29706.m001331Ricinus communis
29863.m001062Ricinus communis
29912.m005374Ricinus communis
NP_001067252Oryza sativa Japonica Group
188942Chlamydomonas reinhardtii
NP_175549Arabidopsis thaliana
NP_188870Arabidopsis thaliana
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PROSITEPS511950.03967IPR014014RNA helicase, DEAD-box type, Q motif
SMARTSM004875.300019852250354E-5558255IPR014001DEAD-like helicase, N-terminal
PfamPF002701.4000000000000064E-3964225IPR011545DNA/RNA helicase, DEAD/DEAH box type, N-terminal
PROSITEPS511920.070240IPR014021Helicase, superfamily 1/2, ATP-binding domain
PROSITEPS000390.0186194IPR000629RNA helicase, ATP-dependent, DEAD-box, conserved site
PROSITEPS511940.0251412IPR001650DNA/RNA helicase, C-terminal
SMARTSM004902.499998119564648E-31292373IPR001650DNA/RNA helicase, C-terminal
PfamPF002711.0E-22298373IPR001650DNA/RNA helicase, C-terminal