You are querying gene by "AT1G52830".

Locus: AT1G52830 Alias: IAA6

Hormone Evidence Function category Gene Description PMID
auxinGeneOntology - response to auxin stimulus 7658471

Basic gene information ( show / hide contents )

Locus AT1G52830 | Chromosome: 1 | Strand: -
Description response to auxin stimulus
Alias
IAA6( alias )
SHY1( alias )
Gene model
AT1G52830.1 | From: 19676164 | To: 19677312
Sequence
AT1G52830.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
transcription factor activity PMID: 11118137
cellular_component
nucleus PMID: 7658471
biological_process
response to auxin stimulus PMID: 7658471
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT1G52830.1 
length: 829 
miRNA : ath-miR869.2
length: 21 
 
mfe: -27.6 kcal/mol 
p-value: 0.002830 
 
position  467 
target 5' U                A   G 
           UCGGCUGUCUUGGCAU GGA  
           AGUUGAUAGAGUUGUG UCU  
miRNA  3' C                G     
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

No related Ortholog Groups information for this gene.

DatabaseEntry IDE-valueStartEndInterPro IDDescription
PfamPF023093.1e-586187IPR003311AUX/IAA protein
PROSITEPS5096228.08194179IPR011525Aux/IAA-ARF-dimerisation