You are querying gene by "AT1G52340".

Locus: AT1G52340 Alias: ABA2

Hormone Evidence Function category Gene Description PMID
abscisic acidMutant Hormone biosynthesis encodes a unique Arabidopsis short-chain dehydrogenase/reductase (SDR1) involved in the conversion of xanthoxin to ABA-aldehyde during ABA biosynthesis 12417697 12692318 8665840
GeneOntology - abscisic acid biosynthetic process 9159947

Basic gene information ( show / hide contents )

Locus AT1G52340 | Chromosome: 1 | Strand: -
Description encodes a unique Arabidopsis short-chain dehydrogenase/reductase (SDR1) involved in the conversion of xanthoxin to ABA-aldehyde during ABA biosynthesis
Alias
ABA2( alias )
ATABA2( alias )
GIN1( alias )
ISI4( alias )
SDR1( alias )
SIS4( alias )
SRE1( alias )
Gene model
AT1G52340.1 | From: 19493463 | To: 19495317
Sequence
AT1G52340.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
alcohol dehydrogenase activity PMID: 0012417697
xanthoxin dehydrogenase activity PMID: 12172025
oxidoreductase activity PMID:
cellular_component
cytosol PMID: 0012417697
biological_process
proline biosynthetic process PMID: 9787459
response to water deprivation PMID: 9787459
regulation of abscisic acid biosynthetic process PMID: 17010113
response to heat PMID: 15923322
abscisic acid biosynthetic process PMID: 9159947
sugar mediated signaling PMID: 12663220
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   abscisic acid   ]

Genotype PMID Type
aba2 12417697 12692318 8665840 mutant

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT1G52340.1 
length: 1182 
miRNA : ath-miR857
length: 21 
 
mfe: -22.8 kcal/mol 
p-value: 0.023287 
 
position  422 
target 5' G        A      A       U 
           AUAUACUU UCAACA UGCAGGA  
           UAUGUGGA AGUUGU AUGUUUU  
miRNA  3'                           
 
 
Gene1Gene2Positive/NegativeCategoryEnzyme activityEvidencePMID
AT1G52340AT1G15550negativeotherN/Amutance17933900
AT1G52340AT1G79460negativeotherN/Amutance17933900
AT1G52340AT1G80330negativeotherN/Amutance17933900
AT1G52340AT1G80340negativeotherN/Amutance17933900
AT1G52340AT4G21690negativeotherN/Amutance17933900

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_15923
AccessionTaxon
NP_001068384Oryza sativa Japonica Group
NP_175644 ( AT1G52340 )Arabidopsis thaliana
NP_001030987Arabidopsis thaliana
NP_001118409Arabidopsis thaliana
NP_172224Arabidopsis thaliana
NP_180491Arabidopsis thaliana
NP_180492Arabidopsis thaliana
NP_180493Arabidopsis thaliana
NP_565680Arabidopsis thaliana
NP_850131Arabidopsis thaliana
NP_180494Arabidopsis thaliana
NP_180625Arabidopsis thaliana
NP_172225Arabidopsis thaliana
NP_001051666Oryza sativa Japonica Group
29588.m000888Ricinus communis
30131.m007229Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PANTHERPTHR194100.01272IPR002198Short-chain dehydrogenase/reductase SDR
Gene3DG3DSA:3.40.50.7204.3000017064587875E-6717279IPR016040NAD(P)-binding domain
PfamPF001065.8000000000000365E-2421191IPR002198Short-chain dehydrogenase/reductase SDR
PRINTSPR000812.1000026783402986E-372239IPR002347Glucose/ribitol dehydrogenase
PRINTSPR000804.000003008698826E-1298109IPR002198Short-chain dehydrogenase/reductase SDR
PRINTSPR000812.1000026783402986E-3798109IPR002347Glucose/ribitol dehydrogenase
PRINTSPR000812.1000026783402986E-37147163IPR002347Glucose/ribitol dehydrogenase
PRINTSPR000804.000003008698826E-12153161IPR002198Short-chain dehydrogenase/reductase SDR
PRINTSPR000804.000003008698826E-12173192IPR002198Short-chain dehydrogenase/reductase SDR
PRINTSPR000812.1000026783402986E-37173192IPR002347Glucose/ribitol dehydrogenase
PRINTSPR000812.1000026783402986E-37194211IPR002347Glucose/ribitol dehydrogenase
PRINTSPR000812.1000026783402986E-37238258IPR002347Glucose/ribitol dehydrogenase