You are querying gene by "AT1G52340".

Locus: AT1G52340 Alias: ABA2

Hormone Evidence Function category Gene Description PMID
abscisic acidMutant Hormone biosynthesis encodes a unique Arabidopsis short-chain dehydrogenase/reductase (SDR1) involved in the conversion of xanthoxin to ABA-aldehyde during ABA biosynthesis 12417697 12692318 8665840
GeneOntology - abscisic acid biosynthetic process 9159947

Basic gene information ( show / hide contents )

Locus AT1G52340 | Chromosome: 1 | Strand: -
Description encodes a unique Arabidopsis short-chain dehydrogenase/reductase (SDR1) involved in the conversion of xanthoxin to ABA-aldehyde during ABA biosynthesis
ABA2( alias )
ATABA2( alias )
GIN1( alias )
ISI4( alias )
SDR1( alias )
SIS4( alias )
SRE1( alias )
Gene model
AT1G52340.1 | From: 19493463 | To: 19495317
AT1G52340.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
alcohol dehydrogenase activity PMID: 0012417697
xanthoxin dehydrogenase activity PMID: 12172025
oxidoreductase activity PMID:
cytosol PMID: 0012417697
proline biosynthetic process PMID: 9787459
response to water deprivation PMID: 9787459
regulation of abscisic acid biosynthetic process PMID: 17010113
response to heat PMID: 15923322
abscisic acid biosynthetic process PMID: 9159947
sugar mediated signaling PMID: 12663220
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   abscisic acid   ]

Genotype PMID Type
aba2 12417697 12692318 8665840 mutant

Microarray data for this gene

Hormone treatment related datasets  
Abiotic stress treatment related datasets (in root)  
Abiotic stress treatment related datasets (in shoot)  
Development related datasets  

miRNA interaction information for this gene

(Note:target use cDNA sequence)
target: AT1G52340.1 
length: 1182 
miRNA : ath-miR857
length: 21 
mfe: -22.8 kcal/mol 
p-value: 0.023287 
position  422 
target 5' G        A      A       U 
miRNA  3'                           
Gene1Gene2Positive/NegativeCategoryEnzyme activityEvidencePMID

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_15923
NP_001068384Oryza sativa Japonica Group
NP_175644 ( AT1G52340 )Arabidopsis thaliana
NP_001030987Arabidopsis thaliana
NP_001118409Arabidopsis thaliana
NP_172224Arabidopsis thaliana
NP_180491Arabidopsis thaliana
NP_180492Arabidopsis thaliana
NP_180493Arabidopsis thaliana
NP_565680Arabidopsis thaliana
NP_850131Arabidopsis thaliana
NP_180494Arabidopsis thaliana
NP_180625Arabidopsis thaliana
NP_172225Arabidopsis thaliana
NP_001051666Oryza sativa Japonica Group
29588.m000888Ricinus communis
30131.m007229Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PANTHERPTHR194100.01272IPR002198Short-chain dehydrogenase/reductase SDR
Gene3DG3DSA: domain
PfamPF001065.8000000000000365E-2421191IPR002198Short-chain dehydrogenase/reductase SDR
PRINTSPR000812.1000026783402986E-372239IPR002347Glucose/ribitol dehydrogenase
PRINTSPR000804.000003008698826E-1298109IPR002198Short-chain dehydrogenase/reductase SDR
PRINTSPR000812.1000026783402986E-3798109IPR002347Glucose/ribitol dehydrogenase
PRINTSPR000812.1000026783402986E-37147163IPR002347Glucose/ribitol dehydrogenase
PRINTSPR000804.000003008698826E-12153161IPR002198Short-chain dehydrogenase/reductase SDR
PRINTSPR000804.000003008698826E-12173192IPR002198Short-chain dehydrogenase/reductase SDR
PRINTSPR000812.1000026783402986E-37173192IPR002347Glucose/ribitol dehydrogenase
PRINTSPR000812.1000026783402986E-37194211IPR002347Glucose/ribitol dehydrogenase
PRINTSPR000812.1000026783402986E-37238258IPR002347Glucose/ribitol dehydrogenase