You are querying gene by "AT1G51965".

Locus: AT1G51965 Alias: ABO5

Hormone Evidence Function category Gene Description PMID
abscisic acidMutant Hormone signal transduction pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: PGR3 (PROTON GRADIENT REGULATION 3) (TAIR:AT4G31850.1); Has 21191 Blast hits to 6126 proteins in 185 species: Archae - 5; Bacteria - 14; Metazoa - 565; Fungi - 542; Plants - 18830; Viruses - 0; Other Eukaryotes - 1235 (source: NCBI BLink). 20561255

Basic gene information ( show / hide contents )

Locus AT1G51965 | Chromosome: 1 | Strand: -
Description pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: PGR3 (PROTON GRADIENT REGULATION 3) (TAIR:AT4G31850.1); Has 21191 Blast hits to 6126 proteins in 185 species: Archae - 5; Bacteria - 14; Metazoa - 565; Fungi - 542; Plants - 18830; Viruses - 0; Other Eukaryotes - 1235 (source: NCBI BLink).
Alias
ABO5( alias )
Gene model
AT1G51965.1 | From: 19315747 | To: 19317814
Sequence
AT1G51965.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
biological_process
biological_process_unknown PMID:
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   abscisic acid   ]

Genotype PMID Type
abo5 20561255 mutant
abo5 abi1-1 20561255 mutant
abo5 abi2-1 20561255 mutant
abo5 abi3-1 20561255 mutant
abo5 abi4-1 20561255 mutant
abo5 abi5-1 20561255 mutant

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT1G51965.1 
length: 1953 
miRNA : ath-miR161.2
length: 21 
 
mfe: -23.2 kcal/mol 
p-value: 0.015688 
 
position  1223 
target 5' A       A G            G 
           UAGUUAC U UCGAUGC UUGA  
           AUCAGUG A AGUUACG AACU  
miRNA  3'           A       U      
 
 
target: AT1G51965.1 
length: 1953 
miRNA : ath-miR396a
length: 21 
 
mfe: -24.6 kcal/mol 
p-value: 0.039778 
 
position  1072 
target 5' A    A  U            A 
           GGUU GA GGAGUUGUGGAG  
           UCAA UU UUUCGACACCUU  
miRNA  3' G    G  C              
 
 
target: AT1G51965.1 
length: 1953 
miRNA : ath-miR396b
length: 21 
 
mfe: -24.6 kcal/mol 
p-value: 0.035779 
 
position  1071 
target 5' G     A  U            A 
           AGGUU GA GGAGUUGUGGAG  
           UUCAA UU UUUCGACACCUU  
miRNA  3'       G  C              
 
 
target: AT1G51965.1 
length: 1953 
miRNA : ath-miR868
length: 21 
 
mfe: -24.8 kcal/mol 
p-value: 0.009735 
 
position  1341 
target 5' U     C        C      C 
           GUGUU UCGGCGCU GGGAAG  
           CGUAA AGUCGUGA UUCUUC  
miRNA  3'       U        A        
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_59314
AccessionTaxon
NP_683419 ( AT1G51965 )Arabidopsis thaliana
NP_001046348Oryza sativa Japonica Group
estExt_Genewise1.C_770138Physcomitrella patens subsp. patens
30146.m003491Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PROSITEPS513750.0132169IPR002885Pentatricopeptide repeat
TIGRFAMTIGR007567700.001713877385134171IPR002885Pentatricopeptide repeat
PROSITEPS513750.0202236IPR002885Pentatricopeptide repeat
PfamPF015350.57204233IPR002885Pentatricopeptide repeat
TIGRFAMTIGR007560.0017000001561047378204238IPR002885Pentatricopeptide repeat
TIGRFAMTIGR0075627.999996626116346239270IPR002885Pentatricopeptide repeat
PROSITEPS513750.0269303IPR002885Pentatricopeptide repeat
PfamPF015354.599999999999999E-4271301IPR002885Pentatricopeptide repeat
TIGRFAMTIGR007564.100000492084246E-4271305IPR002885Pentatricopeptide repeat
PROSITEPS513750.0304338IPR002885Pentatricopeptide repeat
TIGRFAMTIGR007562.5999994671899465E-5306340IPR002885Pentatricopeptide repeat
PfamPF015350.01308336IPR002885Pentatricopeptide repeat
PROSITEPS513750.0339369IPR002885Pentatricopeptide repeat
PROSITEPS513750.0371405IPR002885Pentatricopeptide repeat
TIGRFAMTIGR00756429.999934584839373407IPR002885Pentatricopeptide repeat
PfamPF0153573.00000000000001375400IPR002885Pentatricopeptide repeat
PROSITEPS513750.0406440IPR002885Pentatricopeptide repeat
TIGRFAMTIGR007560.6299999951803623408442IPR002885Pentatricopeptide repeat
PfamPF015351.8999999999999997409438IPR002885Pentatricopeptide repeat
PROSITEPS513750.0441475IPR002885Pentatricopeptide repeat
TIGRFAMTIGR007560.00860000192604692443477IPR002885Pentatricopeptide repeat
PfamPF015350.45444472IPR002885Pentatricopeptide repeat
PROSITEPS513750.0476510IPR002885Pentatricopeptide repeat
PfamPF015354.3999999999999996E-4478508IPR002885Pentatricopeptide repeat
TIGRFAMTIGR007567.499996058514449E-7478512IPR002885Pentatricopeptide repeat
PROSITEPS513750.0511545IPR002885Pentatricopeptide repeat
PfamPF015356.59999999999999E-6513543IPR002885Pentatricopeptide repeat
TIGRFAMTIGR007569.899996308397175E-8513547IPR002885Pentatricopeptide repeat
PROSITEPS513750.0546580IPR002885Pentatricopeptide repeat
PfamPF015352.7000000000000006E-4548578IPR002885Pentatricopeptide repeat
TIGRFAMTIGR007567.20000348184352E-7548582IPR002885Pentatricopeptide repeat
PROSITEPS513750.0581615IPR002885Pentatricopeptide repeat
PfamPF015354.1E-4583613IPR002885Pentatricopeptide repeat
TIGRFAMTIGR007564.500000347393468E-6583617IPR002885Pentatricopeptide repeat