You are querying gene by "AT1G50200".

Locus: AT1G50200 Alias: ACD

Expression of this gene is regulated by hormone (see microarray data for this gene), but no genetic evidence or Gene Ontology evidence yet supported that this is a hormone-related gene.

Basic gene information ( show / hide contents )

Locus AT1G50200 | Chromosome: 1 | Strand: -
Description ALANYL-TRNA SYNTHETASE (ALATS); FUNCTIONS IN: alanine-tRNA ligase activity, ligase activity, forming aminoacyl-tRNA and related compounds, nucleotide binding, nucleic acid binding, ATP binding; INVOLVED IN: alanyl-tRNA aminoacylation, response to cadmium ion; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alanyl-tRNA synthetase, class IIc (InterPro:IPR002318), Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain (InterPro:IPR018163), Alanyl-tRNA synthetase, class IIc, anti-codon-binding domain (InterPro:IPR018162), Alanyl-tRNA synthetase, class IIc, conserved region (InterPro:IPR018165), Alanyl-tRNA synthetase, class IIc, N-terminal (InterPro:IPR018164), Threonyl/alanyl tRNA synthetase, SAD (InterPro:IPR012947), Phosphoesterase, DHHA1 (InterPro:IPR003156); BEST Arabidopsis thaliana protein match is: EMB1030 (EMBRYO DEFECTIVE 1030); ATP binding / alanine-tRNA ligase/ ligase, forming aminoacyl-tRNA and related compounds / nucleic acid binding / nucleotide binding (TAIR:AT5G22800.1); Has 11052 Blast hits to 10956 proteins in 1797 species: Archae - 239; Bacteria - 4076; Metazoa - 575; Fungi - 127; Plants - 76; Viruses - 0; Other Eukaryotes - 5959 (source: NCBI BLink).
Alias
ACD( alias )
ALATS( alias )
Gene model
AT1G50200.1 | From: 18594872 | To: 18602149
Sequence
AT1G50200.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
ligase activity, forming aminoacyl-tRNA and related compounds PMID:
ATP binding PMID:
nucleic acid binding PMID:
alanine-tRNA ligase activity PMID:
cellular_component
mitochondrion PMID: 16251277
chloroplast PMID: 16251277
biological_process
alanyl-tRNA aminoacylation PMID:
KEGG pathway This gene participates in 2 pathways:
Pathway Enzyme
Alanine and aspartate metabolism alanyl-tRNA synthetase
Aminoacyl-tRNA biosynthesis alanyl-tRNA synthetase
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT1G50200.1 
length: 3407 
miRNA : ath-miR160a
length: 21 
 
mfe: -35.8 kcal/mol 
p-value: 0.003021 
 
position  1144 
target 5' A                   C 
           GGCA AC GGGAGCUAGGC  
           CCGU UG CCCUCGGUCCG  
miRNA  3' A    A  U           U 
 
 
target: AT1G50200.1 
length: 3407 
miRNA : ath-miR160b
length: 21 
 
mfe: -35.8 kcal/mol 
p-value: 0.003372 
 
position  1144 
target 5' A                   C 
           GGCA AC GGGAGCUAGGC  
           CCGU UG CCCUCGGUCCG  
miRNA  3' A    A  U           U 
 
 
target: AT1G50200.1 
length: 3407 
miRNA : ath-miR160c
length: 21 
 
mfe: -35.8 kcal/mol 
p-value: 0.005068 
 
position  1144 
target 5' A                   C 
           GGCA AC GGGAGCUAGGC  
           CCGU UG CCCUCGGUCCG  
miRNA  3' A    A  U           U 
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_10263
AccessionTaxon
NP_175439 ( AT1G50200 )Arabidopsis thaliana
38643Chlamydomonas reinhardtii
NP_001064254Oryza sativa Japonica Group
gw1.04.00.39.1Ostreococcus tauri
e_gw1.164.6.1Physcomitrella patens subsp. patens
27543.m000154Ricinus communis
NP_680210Arabidopsis thaliana
119554Chlamydomonas reinhardtii
fgenesh1_pm.C_Chr_07.0001000029Ostreococcus tauri
estExt_gwp_gw1.C_70160Physcomitrella patens subsp. patens
28349.m000063Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PROSITEPS50860124.34459808IPR018165Alanyl-tRNA synthetase, class IIc, core domain
TIGRFAMTIGR00344063981IPR002318Alanyl-tRNA synthetase, class IIc
PfamPF014112.1e-22464638IPR018164Alanyl-tRNA synthetase, class IIc, N-terminal
PRINTSPR009802.5e-30137148IPR018164Alanyl-tRNA synthetase, class IIc, N-terminal
PRINTSPR009802.5e-30265276IPR018164Alanyl-tRNA synthetase, class IIc, N-terminal
PRINTSPR009802.5e-30292305IPR018164Alanyl-tRNA synthetase, class IIc, N-terminal
SuperFamilySSF1013532.1e-72312537IPR018162Alanyl-tRNA synthetase, class IIc, anti-codon-binding domain
PRINTSPR009802.5e-30349365IPR018164Alanyl-tRNA synthetase, class IIc, N-terminal
PRINTSPR009802.5e-30373386IPR018164Alanyl-tRNA synthetase, class IIc, N-terminal
SuperFamilySSF551861.1e-44634821IPR018163Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain
PfamPF079732.9e-16736794IPR012947Threonyl/alanyl tRNA synthetase, SAD
SMARTSM008636.7e-20736795IPR012947Threonyl/alanyl tRNA synthetase, SAD
PfamPF022721.5e-06925994IPR003156Phosphoesterase, DHHA1