You are querying gene by "AT1G49950".

Locus: AT1G49950 Alias: ATTRB1

Hormone Evidence Function category Gene Description PMID
ethyleneGeneOntology - response to ethylene stimulus 16463103
salicylic acidGeneOntology - response to salicylic acid stimulus 16463103
abscisic acidGeneOntology - response to abscisic acid stimulus 16463103
auxinGeneOntology - response to auxin stimulus 16463103
gibberellinGeneOntology - response to gibberellin stimulus 16463103
jasmonic acidGeneOntology - response to jasmonic acid stimulus 16463103

Basic gene information ( show / hide contents )

Locus AT1G49950 | Chromosome: 1 | Strand: -
Description response to salicylic acid stimulus
Alias
ATTRB1( alias )
TRB1( alias )
Gene model
AT1G49950.3 | From: 18497783 | To: 18500855
AT1G49950.2 | From: 18497771 | To: 18500907
AT1G49950.1 | From: 18497783 | To: 18500840
Sequence
AT1G49950.3 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT1G49950.2 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT1G49950.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
DNA binding PMID:
transcription factor activity PMID: 11118137
cellular_component
nucleus PMID:
nucleosome PMID:
biological_process
response to auxin stimulus PMID: 16463103
response to jasmonic acid stimulus PMID: 16463103
response to gibberellin stimulus PMID: 16463103
response to ethylene stimulus PMID: 16463103
response to abscisic acid stimulus PMID: 16463103
response to salicylic acid stimulus PMID: 16463103
response to cadmium ion PMID: 16463103
response to salt stress PMID: 16463103
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT1G49950.2 
length: 1387 
miRNA : ath-miR866-5p
length: 21 
 
mfe: -22.6 kcal/mol 
p-value: 0.025756 
 
position  7 
target 5' A     G          A  C   A 
           UUGAC GAGGUCCGUU CU UGA  
           AAUUG UUUUAGGCAA GG ACU  
miRNA  3'                     A     
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_29975
AccessionTaxon
estExt_fgenesh1_pg.C_Chr_13.00010057Ostreococcus tauri
NP_564559 ( AT1G49950 )Arabidopsis thaliana
NP_849789Arabidopsis thaliana
NP_973998Arabidopsis thaliana
NP_001043442Oryza sativa Japonica Group
gw1.1.287.1Physcomitrella patens subsp. patens
gw1.176.27.1Physcomitrella patens subsp. patens
29812.m000204Ricinus communis
189408Chlamydomonas reinhardtii
NP_001067263Oryza sativa Japonica Group
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PROSITEPS512940.0158IPR017930HTH transcriptional regulator, Myb-type, DNA-binding
SuperFamilySSF466891.6E-7168IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2999993566539383E-14359IPR012287Homeodomain-related
SMARTSM007173.099999458993703E-7459IPR001005SANT, DNA-binding
PfamPF002491.3000000000000007E-6555IPR014778Myb, DNA-binding
Gene3DG3DSA:1.10.10.104.699998106309878E-6110196IPR011991Winged helix-turn-helix transcription repressor DNA-binding
SMARTSM005264.600000443308617E-13113180IPR005818Histone H1/H5
PfamPF005381.4E-6123178IPR005818Histone H1/H5