You are querying gene by "AT1G49720".

Locus: AT1G49720 Alias: ABF1

Hormone Evidence Function category Gene Description PMID
abscisic acidGeneOntology - abscisic acid mediated signaling 12045268

Basic gene information ( show / hide contents )

Locus AT1G49720 | Chromosome: 1 | Strand: +
Description abscisic acid mediated signaling
Alias
ABF1( alias )
Gene model
AT1G49720.1 | From: 18403760 | To: 18406296
Sequence
AT1G49720.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
DNA binding PMID: 10636868
protein binding PMID: 16299177
transcription activator activity PMID: 10636868
transcription factor activity PMID: 11118137
cellular_component
nucleus PMID: 12045268
biological_process
abscisic acid mediated signaling PMID: 12045268
regulation of transcription, DNA-dependent PMID: 11019812
response to stress PMID: 10636868
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT1G49720.1 
length: 1606 
miRNA : ath-miR829.2
length: 21 
 
mfe: -22.1 kcal/mol 
p-value: 0.013031 
 
position  670 
target 5' G   G          G      G 
           CUG UUUGGAGUUU GAUUUG  
           GAU GAACUUCGAA UUAAAC  
miRNA  3'     G          A        
 
 
Gene1Gene2Positive/NegativeCategoryEnzyme activityEvidencePMID
AT1G49720ABRESPositivetransciptN/AGO/othersN/A
AT1G49720AT1G20440PositivetransciptN/AGO/othersN/A
AT1G49720AT2G38050PositivetransciptN/AGO/othersN/A
AT1G49720AT3G23050PositivetransciptN/AGO/othersN/A
AT1G49720AT3G63210PositivetransciptN/AGO/othersN/A

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_24368
AccessionTaxon
NP_001154626Arabidopsis thaliana
NP_564551 ( AT1G49720 )Arabidopsis thaliana
NP_566629Arabidopsis thaliana
gw1.9.244.1Physcomitrella patens subsp. patens
29801.m003176Ricinus communis
30170.m013868Ricinus communis
NP_849777Arabidopsis thaliana
NP_973981Arabidopsis thaliana
NP_001048225Oryza sativa Japonica Group
NP_001057118Oryza sativa Japonica Group
NP_001063362Oryza sativa Japonica Group
NP_001062018Oryza sativa Japonica Group
141909Chlamydomonas reinhardtii
DatabaseEntry IDE-valueStartEndInterPro IDDescription
SMARTSM003384.000003008698826E-14309374IPR004827Basic-leucine zipper (bZIP) transcription factor
PROSITEPS502170.0311362IPR004827Basic-leucine zipper (bZIP) transcription factor
PfamPF001705.400000000000006E-9313364IPR011616bZIP transcription factor, bZIP-1
PROSITEPS000360.0316331IPR004827Basic-leucine zipper (bZIP) transcription factor