You are querying gene by "AT1G49040".

Locus: AT1G49040 Alias: SCD1

Hormone Evidence Function category Gene Description PMID
salicylic acidMutant Hormone signal transduction Encodes soluble protein containing N-terminal DENN domain and eight C-terminal WD-40 repeats. Involved in cytokinesis of guard mother cells and leaf epidermal cells. The overall growth and development of mutant plants is severely affected, they are smaller than wt, with defects in seedling development, leaf expansion and flower morphology which renders the mutant conditionally sterile. 20472560

Basic gene information ( show / hide contents )

Locus AT1G49040 | Chromosome: 1 | Strand: -
Description Encodes soluble protein containing N-terminal DENN domain and eight C-terminal WD-40 repeats. Involved in cytokinesis of guard mother cells and leaf epidermal cells. The overall growth and development of mutant plants is severely affected, they are smaller than wt, with defects in seedling development, leaf expansion and flower morphology which renders the mutant conditionally sterile.
Alias
SCD1( alias )
Gene model
AT1G49040.1 | From: 18142902 | To: 18152649
AT1G49040.2 | From: 18145470 | To: 18152601
Sequence
AT1G49040.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT1G49040.2 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
protein binding PMID: 12874123
biological_process
cytokinesis by cell plate formation PMID: 12874123
multidimensional cell growth PMID: 12874123
guard mother cell cytokinesis PMID: 12874123
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   salicylic acid   ]

Genotype PMID Type
scd1-1 20472560 mutant
scd1-1 sid2-2 20472560 mutant

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT1G49040.1 
length: 3904 
miRNA : ath-miR869.1
length: 21 
 
mfe: -22.7 kcal/mol 
p-value: 0.099527 
 
position  28 
target 5' G  G            G   C 
           GA GCC GAAUUGAA CAA  
           UU UGG CUUAACUU GUU  
miRNA  3' G  G   U        G   A 
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_29442
AccessionTaxon
30174.m008710Ricinus communis
NP_175333Arabidopsis thaliana
fgenesh1_pg.scaffold_6000026Physcomitrella patens subsp. patens
NP_850959 ( AT1G49040 )Arabidopsis thaliana
NP_001043390Oryza sativa Japonica Group
0100010046Ostreococcus tauri
DatabaseEntry IDE-valueStartEndInterPro IDDescription
SMARTSM008004.7000032667138726E-231104IPR005113uDENN
PROSITEPS509460.01110IPR005113uDENN
SMARTSM008004.7000032667138726E-231104IPR005113uDENN
PROSITEPS509460.01110IPR005113uDENN
PfamPF034568.400000000000007E-152103IPR005113uDENN
PfamPF034565.7999999999999964E-152103IPR005113uDENN
SMARTSM007991.1999906342192357E-65122306IPR001194DENN
PROSITEPS502110.0122306IPR001194DENN
SMARTSM007991.1999906342192357E-65122306IPR001194DENN
PROSITEPS502110.0122306IPR001194DENN
PfamPF021416.400000000000042E-49123304IPR001194DENN
PfamPF021414.199999999999995E-49123304IPR001194DENN
PfamPF034551.0E-12365430IPR005112dDENN
SMARTSM008019.59999914716171E-15365430IPR005112dDENN
PROSITEPS509470.0365430IPR005112dDENN
PfamPF034557.200000000000009E-13365430IPR005112dDENN
SMARTSM008019.59999914716171E-15365430IPR005112dDENN
PROSITEPS509470.0365430IPR005112dDENN
SuperFamilySSF509781.8E-628301133IPR011046WD40 repeat-like-containing domain
SMARTSM003200.06000000322506156832883IPR001680WD40 repeat
PfamPF004000.17000000000000004835883IPR019781WD40 repeat, subgroup
PROSITEPS502940.08651187IPR017986WD40-repeat-containing domain
SMARTSM003201.7000001561047378E-4888925IPR001680WD40 repeat
PfamPF004000.005199999999999998890925IPR019781WD40 repeat, subgroup
Gene3DG3DSA:2.130.10.101.3000049540732414E-558911182IPR015943WD40/YVTN repeat-like-containing domain
PROSITEPS500820.0895934IPR019782WD40 repeat 2
PRINTSPR003203.3999997243771676E-5912926IPR020472G-protein beta WD-40 repeat, region
SMARTSM003201.499999775833517E-6928966IPR001680WD40 repeat
PfamPF004000.0035000000000000005932966IPR019781WD40 repeat, subgroup
PROSITEPS500820.0935975IPR019782WD40 repeat 2
PRINTSPR003203.3999997243771676E-5953967IPR020472G-protein beta WD-40 repeat, region
PROSITEPS006780.0953967IPR019775WD40 repeat, conserved site
SMARTSM003200.19999999287058269691008IPR001680WD40 repeat
PfamPF00400710.00000000000039721008IPR019781WD40 repeat, subgroup
PROSITEPS500820.09801017IPR019782WD40 repeat 2
PROSITEPS006780.09951009IPR019775WD40 repeat, conserved site
SMARTSM003204.500000347393468E-610111048IPR001680WD40 repeat
PfamPF004006.90000000000001E-510121048IPR019781WD40 repeat, subgroup
PROSITEPS500820.010181057IPR019782WD40 repeat 2
PRINTSPR003203.3999997243771676E-510351049IPR020472G-protein beta WD-40 repeat, region
SMARTSM003202.5999994671899463E-610511090IPR001680WD40 repeat
PfamPF004000.00600000000000000510521090IPR019781WD40 repeat, subgroup
PROSITEPS500820.010581090IPR019782WD40 repeat 2
PROSITEPS006780.010771091IPR019775WD40 repeat, conserved site
SMARTSM0032018.00000010627866610951132IPR001680WD40 repeat
SMARTSM003200.3899999956088412411431182IPR001680WD40 repeat
PfamPF0040029.99999999999999611571182IPR019781WD40 repeat, subgroup
PROSITEPS006780.011691183IPR019775WD40 repeat, conserved site