You are querying gene by "AT1G49010".

Locus: AT1G49010 Alias: AT1G49010

Hormone Evidence Function category Gene Description PMID
salicylic acidGeneOntology - response to salicylic acid stimulus 16463103
auxinGeneOntology - response to auxin stimulus 16463103
jasmonic acidGeneOntology - response to jasmonic acid stimulus 16463103
gibberellinGeneOntology - response to gibberellin stimulus 16463103

Basic gene information ( show / hide contents )

Locus AT1G49010 | Chromosome: 1 | Strand: +
Description response to auxin stimulus
Alias
AT1G49010( alias )
AT1G49010( alias )
AT1G49010( alias )
AT1G49010( alias )
Gene model
AT1G49010.1 | From: 18136313 | To: 18137593
Sequence
AT1G49010.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
DNA binding PMID:
transcription factor activity PMID: 11118137
biological_process
response to salicylic acid stimulus PMID: 16463103
response to auxin stimulus PMID: 16463103
response to cadmium ion PMID: 16463103
response to salt stress PMID: 16463103
response to jasmonic acid stimulus PMID: 16463103
response to gibberellin stimulus PMID: 16463103
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT1G49010.1 
length: 1161 
miRNA : ath-miR397b
length: 21 
 
mfe: -26.3 kcal/mol 
p-value: 0.005698 
 
position  997 
target 5' C       A       G C   A 
           CGUCGAC AUGCACU A UGA  
           GUAGUUG UACGUGA U ACU  
miRNA  3'         C       G U     
 
 
target: AT1G49010.1 
length: 1161 
miRNA : ath-miR779.1
length: 21 
 
mfe: -26.6 kcal/mol 
p-value: 0.009844 
 
position  76 
target 5' A   U           G A      A 
           GUG GGUGGCAACAU G GCAGAG  
           UAC UCGUCGUUGUA U CGUCUU  
miRNA  3'                            
 
 
target: AT1G49010.1 
length: 1161 
miRNA : ath-miR865-3p
length: 21 
 
mfe: -20.6 kcal/mol 
p-value: 0.016751 
 
position  510 
target 5' U     C         A     G 
           UUGGA AAGUUUGGG AAGGA  
           AACCU UUUAAACUC UUUUU  
miRNA  3'       A         C       
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_59094
AccessionTaxon
NP_564537 ( AT1G49010 )Arabidopsis thaliana
estExt_fgenesh1_pg.C_Chr_03.00010215Ostreococcus tauri
30174.m008717Ricinus communis
NP_001043221Oryza sativa Japonica Group
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PROSITEPS512930.0361IPR017884SANT, eukarya
SMARTSM007179.499999851064376E-4459IPR001005SANT, DNA-binding
PANTHERPTHR118211.1000002989614869E-5695IPR015609Molecular chaperone, heat shock protein, Hsp40, DnaJ
SuperFamilySSF466894.2E-11764IPR009057Homeodomain-like
SuperFamilySSF466892.7E-16127187IPR009057Homeodomain-like
PROSITEPS512940.0128184IPR017930HTH transcriptional regulator, Myb-type, DNA-binding
TIGRFAMTIGR015579.70001793430487E-20131183IPR006447Myb-like DNA-binding domain, SHAQKYF class
SMARTSM007171.29999924468179E-10132182IPR001005SANT, DNA-binding
PfamPF002494.1E-7135179IPR014778Myb, DNA-binding