You are querying gene by "AT1G48410".

Locus: AT1G48410 Alias: AGO1

Hormone Evidence Function category Gene Description PMID
auxinGeneOntology - response to auxin stimulus 15829601

Basic gene information ( show / hide contents )

Locus AT1G48410 | Chromosome: 1 | Strand: -
Description response to auxin stimulus
Alias
AGO1( alias )
Gene model
AT1G48410.1 | From: 17889766 | To: 17896254
AT1G48410.2 | From: 17889766 | To: 17896254
Sequence
AT1G48410.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT1G48410.2 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
siRNA binding PMID: 16081530
endoribonuclease activity PMID: 16081530
protein binding PMID: 17869109
miRNA binding PMID: 16081530
cellular_component
nucleus PMID: 17442570
cytoplasm PMID: 9427751
biological_process
response to auxin stimulus PMID: 15829601
RNA interference PMID: 17558406
adventitious root development PMID: 15829601
virus induced gene silencing PMID: 17158744
leaf morphogenesis PMID: 9427751
auxin metabolic process PMID: 15829601
posttranscriptional gene silencing PMID: 11910010
response to far red light PMID: 15829601
gene silencing by miRNA PMID: 15131082
embryonic development ending in seed dormancy PMID: 9876176
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT1G48410.1 
length: 3501 
miRNA : ath-miR773
length: 21 
 
mfe: -26.2 kcal/mol 
p-value: 0.044580 
 
position  991 
target 5' A                U    G 
           AG UAGGGGCUGGAGG CAAA  
           UC GUUUUCGACCUUC GUUU  
miRNA  3' C  U                    
 
 
target: AT1G48410.1 
length: 3501 
miRNA : ath-miR843
length: 21 
 
mfe: -25.3 kcal/mol 
p-value: 0.072178 
 
position  2099 
target 5' A     C  U     C      C 
           CCAGU AG GCUCG CCUGAG  
           GGUUA UU CGAGC GGAUUU  
miRNA  3' A     C        U        
 
 
target: AT1G48410.2 
length: 3507 
miRNA : ath-miR773
length: 21 
 
mfe: -26.2 kcal/mol 
p-value: 0.044653 
 
position  991 
target 5' A                U    G 
           AG UAGGGGCUGGAGG CAAA  
           UC GUUUUCGACCUUC GUUU  
miRNA  3' C  U                    
 
 
target: AT1G48410.2 
length: 3507 
miRNA : ath-miR843
length: 21 
 
mfe: -25.3 kcal/mol 
p-value: 0.072309 
 
position  2105 
target 5' A     C  U     C      C 
           CCAGU AG GCUCG CCUGAG  
           GGUUA UU CGAGC GGAUUU  
miRNA  3' A     C        U        
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_10780
AccessionTaxon
NP_175274 ( AT1G48410 )Arabidopsis thaliana
NP_199194Arabidopsis thaliana
NP_849784Arabidopsis thaliana
NP_850110Arabidopsis thaliana
18730Chlamydomonas reinhardtii
NP_001046021Oryza sativa Japonica Group
NP_001047704Oryza sativa Japonica Group
NP_001048621Oryza sativa Japonica Group
NP_001050910Oryza sativa Japonica Group
NP_001050911Oryza sativa Japonica Group
NP_001051583Oryza sativa Japonica Group
NP_001053581Oryza sativa Japonica Group
NP_001057988Oryza sativa Japonica Group
NP_001058648Oryza sativa Japonica Group
NP_001059079Oryza sativa Japonica Group
NP_001059609Oryza sativa Japonica Group
e_gw1.173.6.1Physcomitrella patens subsp. patens
estExt_Genewise1.C_280130Physcomitrella patens subsp. patens
estExt_fgenesh1_pg.C_70098Physcomitrella patens subsp. patens
29589.m001295Ricinus communis
29677.m000188Ricinus communis
29807.m000479Ricinus communis
29844.m003212Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PfamPF086999.5e-24334386IPR014811Domain of unknown function DUF1785
PfamPF086997.499999999999999E-21336388IPR014811Domain of unknown function DUF1785
PfamPF021701.5e-34388523IPR003100Argonaute/Dicer protein, PAZ
PfamPF021701.2000000000000005E-31390525IPR003100Argonaute/Dicer protein, PAZ
PROSITEPS5082134.025391501IPR003100Argonaute/Dicer protein, PAZ
PROSITEPS508210.0393503IPR003100Argonaute/Dicer protein, PAZ
SuperFamilySSF530982.6e-23622989IPR012337Polynucleotidyl transferase, ribonuclease H fold
SuperFamilySSF530982.6E-23624991IPR012337Polynucleotidyl transferase, ribonuclease H fold
PROSITEPS5082259.906676997IPR003165Stem cell self-renewal protein Piwi
PfamPF021713.5e-112677996IPR003165Stem cell self-renewal protein Piwi
PROSITEPS508220.0678999IPR003165Stem cell self-renewal protein Piwi
PfamPF021712.7999999999999407E-109679998IPR003165Stem cell self-renewal protein Piwi