You are querying gene by "AT1G32640".

Locus: AT1G32640 Alias: ATMYC2

Hormone Evidence Function category Gene Description PMID
abscisic acidMutant Hormone signal transduction encodes a basic helix-loop-helix(bHLH)-related protein, a transciption factor it bound specifically to the MYC recognition site, in the 67-bp promoter region of rd22 can regulate drought-inducible gene expression. 12509522
GeneOntology - response to abscisic acid stimulus 9368419
jasmonic acidMutant Hormone signal transduction Encodes a MYC-related transcriptional activator with a typical DNA binding domain of a basic helix-loop-helix leucine zipper motif. Binds to an extended G-Box promoter motif. Its transcription is induced by dehydration stress and ABA treatment. Negative regulator of blue light杕ediated photomorphogenic growth and blue and far-red-light杛egulated gene expression. Positive regulator of lateral root formation. Regulates diverse JA-dependent functions. Negatively regulates Trp metabolism and biosynthesis of Trp-derived secondary metabolites. Positively regulates flavonoid biosynthesis, resistance to insects, and response to oxidative stress. Regulates other transcription factors, and negatively regulates its own expression. 15208388 12509522 17616737
GeneOntology - jasmonic acid mediated signaling pathway

Basic gene information ( show / hide contents )

Locus AT1G32640 | Chromosome: 1 | Strand: -
Description Encodes a MYC-related transcriptional activator with a typical DNA binding domain of a basic helix-loop-helix leucine zipper motif. Binds to an extended G-Box promoter motif. Its transcription is induced by dehydration stress and ABA treatment. Negative regulator of blue light杕ediated photomorphogenic growth and blue and far-red-light杛egulated gene expression. Positive regulator of lateral root formation. Regulates diverse JA-dependent functions. Negatively regulates Trp metabolism and biosynthesis of Trp-derived secondary metabolites. Positively regulates flavonoid biosynthesis, resistance to insects, and response to oxidative stress. Regulates other transcription factors, and negatively regulates its own expression.
Alias
ATMYC2( alias )
JAI1( alias )
JIN1( alias )
MYC2( alias )
RD22BP1( alias )
ZBF1( alias )
Gene model
AT1G32640.1 | From: 11798790 | To: 11800968
Sequence
AT1G32640.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
DNA binding PMID: 9368419
transcription activator activity PMID: 9368419
transcription factor activity PMID: 12679534
cellular_component
nucleus PMID:
biological_process
response to wounding PMID: 9680973
positive regulation of transcription PMID: 9368419
indole glucosinolate biosynthetic process PMID: 17616737
root development PMID: 17616737
regulation of transcription factor activity PMID: 17616737
response to abscisic acid stimulus PMID: 9368419
jasmonic acid mediated signaling pathway PMID:
regulation of transcription from RNA polymerase II promoter in response to oxidative stress PMID: 17616737
tryptophan metabolic process PMID: 17616737
positive regulation of flavonoid biosynthetic process PMID: 17616737
defense response to insect PMID: 17616737
response to desiccation PMID: 9368419
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

  abscisic acid     jasmonic acid  

[   abscisic acid   ]

Genotype PMID Type
atmyc2 12509522 mutant

[   jasmonic acid   ]

Genotype PMID Type
jin1/jai1 15208388 mutant

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT1G32640.1 
length: 2179 
miRNA : ath-miR447c
length: 22 
 
mfe: -25.4 kcal/mol 
p-value: 0.017687 
 
position  1666 
target 5' G  G    U            U 
           GA GAGA AUGUCGUCUUCG  
           UU UUUU UACAGCAGGGGU  
miRNA  3' G  G    C            U 
 
 
target: AT1G32640.1 
length: 2179 
miRNA : ath-miR838
length: 21 
 
mfe: -22.1 kcal/mol 
p-value: 0.070655 
 
position  1353 
target 5' C   A         C  U    A 
           GUG AAGAAGUAG AG AGAG  
           CAC UUCUUCAUC UC UUUU  
miRNA  3' A   G         U         
 
 
target: AT1G32640.1 
length: 2179 
miRNA : ath-miR844
length: 21 
 
mfe: -23.1 kcal/mol 
p-value: 0.015302 
 
position  1482 
target 5' C  G   C        G     A 
           GC UUA GAGCGGUU UACCA  
           CG AAU UUCGUUAG AUGGU  
miRNA  3' U      A        A       
 
 
target: AT1G32640.1 
length: 2179 
miRNA : ath-miR857
length: 21 
 
mfe: -22.6 kcal/mol 
p-value: 0.061582 
 
position  739 
target 5' U    U         A      U 
           GUAU CCUUCGGCG ACGGAG  
           UAUG GGAAGUUGU UGUUUU  
miRNA  3'      U         A        
 
 
Gene1Gene2Positive/NegativeCategoryEnzyme activityEvidencePMID
AT1G32640ABRESPositivetransciptN/AGO/othersN/A
AT1G32640AT1G04240PositivetransciptN/Amutance17900969
AT1G32640AT1G04550PositivetransciptN/Amutance17900969
AT1G32640AT1G15580PositivetransciptN/Amutance17900969
AT1G32640AT1G20440PositivetransciptN/AGO/othersN/A
AT1G32640AT2G14610PositivetransciptN/Amutance12509522
AT1G32640AT2G14610negativetransciptN/Amolecular16039901
AT1G32640AT2G32410PositivetransciptN/Amutance17900969
AT1G32640AT2G38050PositivetransciptN/AGO/othersN/A
AT1G32640AT2G38120PositivetransciptN/Amutance17900969
AT1G32640AT3G15540PositivetransciptN/Amutance17900969
AT1G32640AT3G23050PositivetransciptN/AGO/othersN/A
AT1G32640AT3G57260PositivetransciptN/Amutance12509522
AT1G32640AT3G63210PositivetransciptN/AGO/othersN/A
AT1G32640AT4G14550PositivetransciptN/Amutance17900969
AT1G32640AT4G14560PositivetransciptN/Amutance17900969
AT1G32640AT5G15960PositivetransciptN/Amolecular12509522
AT1G32640AT5G24770negativetransciptN/Amolecular15548743
AT1G32640AT5G25610negativetransciptN/Amolecular15548743
AT1G32640AT5G25890PositivetransciptN/Amutance17900969
AT1G32640AT5G43700PositivetransciptN/Amutance17900969
AT1G32640AT5G44420negativetransciptN/AGO/others12509522
AT1G32640AT5G44420negativetransciptN/Amolecular15548743
AT1G32640AUX3PositivetransciptN/Amutance17900969

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_30025
AccessionTaxon
NP_001065478Oryza sativa Japonica Group
estExt_fgenesh1_pg.C_740028Physcomitrella patens subsp. patens
29827.m002528Ricinus communis
NP_174541 ( AT1G32640 )Arabidopsis thaliana
NP_193522Arabidopsis thaliana
NP_199488Arabidopsis thaliana
e_gw1.11.52.1Physcomitrella patens subsp. patens
estExt_fgenesh1_pg.C_50104Physcomitrella patens subsp. patens
estExt_fgenesh1_pg.C_740025Physcomitrella patens subsp. patens
estExt_fgenesh1_pg.C_Chr_03.00010054Ostreococcus tauri
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PROSITEPS508880.0438498IPR001092Helix-loop-helix DNA-binding domain
SuperFamilySSF474592.7E-16438515IPR011598Helix-loop-helix DNA-binding
Gene3DG3DSA:4.10.280.102.70000183580768E-11444528IPR011598Helix-loop-helix DNA-binding
PfamPF000102.7999999999999986E-7452497IPR001092Helix-loop-helix DNA-binding domain
SMARTSM003537.000007341299033E-16454503IPR001092Helix-loop-helix DNA-binding domain