You are querying gene by "AT1G28380".

Locus: AT1G28380 Alias: NSL1

Hormone Evidence Function category Gene Description PMID
salicylic acidGeneOntology - regulation of salicylic acid metabolic process 16900325

Basic gene information ( show / hide contents )

Locus AT1G28380 | Chromosome: 1 | Strand: +
Description regulation of salicylic acid metabolic process
Alias
NSL1( alias )
Gene model
AT1G28380.1 | From: 9963579 | To: 9966306
Sequence
AT1G28380.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
molecular_function_unknown PMID:
cellular_component
cellular_component_unknown PMID:
biological_process
plant-type hypersensitive response PMID: 16900325
response to salt stress PMID: 16900325
regulation of salicylic acid metabolic process PMID: 16900325
callose deposition during defense response PMID: 16900325
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT1G28380.1 
length: 2202 
miRNA : ath-miR395a
length: 21 
 
mfe: -26.0 kcal/mol 
p-value: 0.047624 
 
position  1570 
target 5' C      U A             C 
           GGUUUC C CUAGAUGCUUCAG  
           UCAAGG G GGUUUGUGAAGUC  
miRNA  3' C                        
 
 
target: AT1G28380.1 
length: 2202 
miRNA : ath-miR395d
length: 21 
 
mfe: -26.0 kcal/mol 
p-value: 0.050510 
 
position  1570 
target 5' C      U A             C 
           GGUUUC C CUAGAUGCUUCAG  
           UCAAGG G GGUUUGUGAAGUC  
miRNA  3' C                        
 
 
target: AT1G28380.1 
length: 2202 
miRNA : ath-miR395e
length: 21 
 
mfe: -26.0 kcal/mol 
p-value: 0.061901 
 
position  1570 
target 5' C      U A             C 
           GGUUUC C CUAGAUGCUUCAG  
           UCAAGG G GGUUUGUGAAGUC  
miRNA  3' C                        
 
 
target: AT1G28380.1 
length: 2202 
miRNA : ath-miR847
length: 21 
 
mfe: -27.6 kcal/mol 
p-value: 0.019058 
 
position  915 
target 5' G                U U   U 
           UAUC AGAAGAGGAGG G UGA  
           GUAG UCUUCUUCUCC C ACU  
miRNA  3'      U           U       
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_37476
AccessionTaxon
NP_564307 ( AT1G28380 )Arabidopsis thaliana
NP_001056288Oryza sativa Japonica Group
29765.m000740Ricinus communis
30190.m011320Ricinus communis
NP_567698Arabidopsis thaliana
NP_849433Arabidopsis thaliana
NP_001045455Oryza sativa Japonica Group
NP_001058970Oryza sativa Japonica Group
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PROSITEPS514120.05338IPR020864Membrane attack complex component/perforin (MACPF) domain
PfamPF018234.8000000000000085E-28110324IPR020864Membrane attack complex component/perforin (MACPF) domain