You are querying gene by "AT1G28300".

Locus: AT1G28300 Alias: LEC2

Hormone Evidence Function category Gene Description PMID
abscisic acidMutant Hormone signal transduction Transcription factor that contains a B3 domain, a DNA-binding motif unique to plants and characteristic of several transcription factors. Plays critical roles both early and late during embryo development. 12244265

Basic gene information ( show / hide contents )

Locus AT1G28300 | Chromosome: 1 | Strand: -
Description Transcription factor that contains a B3 domain, a DNA-binding motif unique to plants and characteristic of several transcription factors. Plays critical roles both early and late during embryo development.
Alias
LEC2( alias )
Gene model
AT1G28300.1 | From: 9896854 | To: 9899863
Sequence
AT1G28300.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
DNA binding PMID: 16492731
transcription factor activity PMID: 16492731
cellular_component
cellular_component_unknown PMID:
biological_process
seed oilbody biogenesis PMID: 18287041
embryonic development PMID: 0012244265
somatic embryogenesis PMID: 11573014
seed maturation PMID: 18287041
positive regulation of transcription, DNA-dependent PMID: 16492731
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   abscisic acid   ]

Genotype PMID Type
lec2-1 0012244265 mutant
lec2-1fus3-3 16034595 mutant

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT1G28300.1 
length: 1317 
miRNA : ath-miR828
length: 22 
 
mfe: -22.9 kcal/mol 
p-value: 0.007844 
 
position  298 
target 5' U   U   C        U       G 
           UGG AAU CUUGUUUG GGCAAGA  
           ACC UUA GAGUAAAU UCGUUCU  
miRNA  3'         U                  
 
 
Gene1Gene2Positive/NegativeCategoryEnzyme activityEvidencePMID
AT1G28300ABRESPositivetransciptN/AGO/othersN/A
AT1G28300AT1G08780PositivetransciptN/Amutance16731585
AT1G28300AT1G20440PositivetransciptN/AGO/othersN/A
AT1G28300AT2G38050PositivetransciptN/AGO/othersN/A
AT1G28300AT3G23050PositivetransciptN/AGO/othersN/A
AT1G28300AT3G26790PositivetransciptN/Amutance16731585
AT1G28300AT3G63210PositivetransciptN/AGO/othersN/A

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_91749
AccessionTaxon
NP_564304 ( AT1G28300 )Arabidopsis thaliana
30190.m010868Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PROSITEPS508630.0171272IPR003340Transcriptional factor B3
PfamPF023624.400000000000006E-16172267IPR003340Transcriptional factor B3