You are querying gene by "AT1G27320".

Locus: AT1G27320 Alias: AHK3

Hormone Evidence Function category Gene Description PMID
cytokininMutant Hormone receptor Encodes a putative plasma membrane-bound hybrid histidine kinase and cytokinin sensor that is expressed within the female gametophyte, a cytokinin receptor that controls cytokinin-mediated leaf longevity through a specific phosphorylation of the response regulator, ARR2 15166290 16361392
GeneOntology - cytokinin receptor activity 16361392

Basic gene information ( show / hide contents )

Locus AT1G27320 | Chromosome: 1 | Strand: +
Description Encodes a putative plasma membrane-bound hybrid histidine kinase and cytokinin sensor that is expressed within the female gametophyte, a cytokinin receptor that controls cytokinin-mediated leaf longevity through a specific phosphorylation of the response regulator, ARR2
Alias
AHK3( alias )
Gene model
AT1G27320.1 | From: 9487767 | To: 9492280
Sequence
AT1G27320.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
osmosensor activity PMID: 18077346
cytokinin receptor activity PMID: 16361392
protein histidine kinase activity PMID: 16407152
cellular_component
plasma membrane PMID: 16407152
biological_process
regulation of chlorophyll catabolic process PMID: 16361392
regulation of shoot development PMID: 16361392
cytokinin mediated signaling PMID: 12068096
response to water deprivation PMID: 18077346
response to osmotic stress PMID: 18077346
response to cold PMID: 18077346
leaf senescence PMID: 16407152
response to salt stress PMID: 18077346
regulation of seed germination PMID: 16361392
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   cytokinin   ]

Genotype PMID Type
ahk2/ahk3 15166290 16361392 mutant
ore12-1 16407152 mutant
ahk2/ahk3/cre1 15166290 16361392 mutant
cre1-12,ahk3-3 15166290 16361392 mutant

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT1G27320.1 
length: 3562 
miRNA : ath-miR2112-3p
length: 21 
 
mfe: -23.6 kcal/mol 
p-value: 0.057012 
 
position  2751 
target 5' C     U   A            G 
           UGCGC GAG GUGGG AUAAAG  
           ACGCG UUU CGCCU UAUUUC  
miRNA  3'           A     A        
 
 
target: AT1G27320.1 
length: 3562 
miRNA : ath-miR773
length: 21 
 
mfe: -25.2 kcal/mol 
p-value: 0.068038 
 
position  3114 
target 5' G                 A   A 
           GAGAU GGGGCUGGAAG AGA  
           CUCUG UUUCGACCUUC UUU  
miRNA  3'       U           G     
 
 
target: AT1G27320.1 
length: 3562 
miRNA : ath-miR780.1
length: 21 
 
mfe: -34.0 kcal/mol 
p-value: 0.002892 
 
position  1000 
target 5' A      U          G    C 
           ACUUGC UCAACAGCUG CUAG  
           UGGACG AGUUGUCGAC GAUC  
miRNA  3'                        U 
 
 
Gene1Gene2Positive/NegativeCategoryEnzyme activityEvidencePMID
AT1G27320AT1G03430PositiveotherN/Amutance11828030
AT1G27320AT1G32640negativeotherN/AGO/othersN/A
AT1G27320AT1G32640negativeotherN/Amolecular18077346
AT1G27320AT3G15500negativeotherN/Amolecular18077346
AT1G27320AT3G16360PositiveotherN/Amutance11828030
AT1G27320AT3G21510PositiveotherN/Amutance11828030
AT1G27320AT3G29350PositiveotherN/Amutance11828030
AT1G27320AT5G39340PositiveotherN/Amutance11828030

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_12824
AccessionTaxon
gw1.09.00.217.1Ostreococcus tauri
NP_564276 ( AT1G27320 )Arabidopsis thaliana
NP_568532Arabidopsis thaliana
97170Chlamydomonas reinhardtii
NP_001045241Oryza sativa Japonica Group
NP_001048061Oryza sativa Japonica Group
NP_001064436Oryza sativa Japonica Group
fgenesh1_pg.scaffold_44000141Physcomitrella patens subsp. patens
29597.m000294Ricinus communis
29929.m004637Ricinus communis
29968.m000653Ricinus communis
NP_565277Arabidopsis thaliana
NP_849925Arabidopsis thaliana
NP_973396Arabidopsis thaliana
e_gw1.194.71.1Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_500074Physcomitrella patens subsp. patens
fgenesh1_pg.scaffold_252000025Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_2710020Physcomitrella patens subsp. patens
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PROSITEPS508390.0163389IPR006189CHASE
PfamPF039241.9999999999999944E-51164363IPR006189CHASE
SuperFamilySSF473845.0E-17440511IPR009082Signal transduction histidine kinase, homodimeric
PfamPF005126.200000000000002E-16450515IPR003661Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain
SMARTSM003887.600000111158119E-23450515IPR003661Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain
PROSITEPS501090.0457723IPR005467Signal transduction histidine kinase, core
SuperFamilySSF558745.6E-43504718IPR003594ATPase-like, ATP-binding domain
Gene3DG3DSA:3.30.565.104.000003008699158E-27521718IPR003594ATPase-like, ATP-binding domain
PfamPF025184.900000000000004E-27562720IPR003594ATPase-like, ATP-binding domain
SMARTSM003878.399980140249808E-34562723IPR003594ATPase-like, ATP-binding domain
PRINTSPR003447.0999988421114105E-12648662IPR004358Signal transduction histidine kinase-related protein, C-terminal
PRINTSPR003447.0999988421114105E-12666676IPR004358Signal transduction histidine kinase-related protein, C-terminal
PRINTSPR003447.0999988421114105E-12683701IPR004358Signal transduction histidine kinase-related protein, C-terminal
PRINTSPR003447.0999988421114105E-12707720IPR004358Signal transduction histidine kinase-related protein, C-terminal
SuperFamilySSF521725.8E-11738872IPR011006CheY-like
SMARTSM004480.0939999974783881745861IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521721.5E-328891029IPR011006CheY-like
SMARTSM004482.900003546779805E-308901024IPR001789Signal transduction response regulator, receiver domain
PROSITEPS501100.08911028IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.7000000000000003E-168921024IPR001789Signal transduction response regulator, receiver domain