You are querying gene by "AT1G26830".

Locus: AT1G26830 Alias: ATCUL3

Hormone Evidence Function category Gene Description PMID
ethyleneMutant Hormone signal transduction Cullin, putative, similar to Cullin homolog 3 (CUL-3) SP:Q13618, GI:3639052 from (Homo sapiens); contains Pfam profile PF00888: Cullin family. Interacts with other components of E3 ligase complex suggesting it functions in RUB-modification. Forms complexes with BTB domain proteins forming a novel class of E3-based ubiquitin protein-ligase complexes. Mutant is early flowering and has a reduced sensitivity to far-red light. cul3a/cul3b homozygous/heterozygous plants are embryo lethal. 19132085

Basic gene information ( show / hide contents )

Locus AT1G26830 | Chromosome: 1 | Strand: +
Description Cullin, putative, similar to Cullin homolog 3 (CUL-3) SP:Q13618, GI:3639052 from (Homo sapiens); contains Pfam profile PF00888: Cullin family. Interacts with other components of E3 ligase complex suggesting it functions in RUB-modification. Forms complexes with BTB domain proteins forming a novel class of E3-based ubiquitin protein-ligase complexes. Mutant is early flowering and has a reduced sensitivity to far-red light. cul3a/cul3b homozygous/heterozygous plants are embryo lethal.
Alias
ATCUL3( alias )
ATCUL3A( alias )
CUL3( alias )
CUL3A( alias )
Gene model
AT1G26830.1 | From: 9295723 | To: 9298528
Sequence
AT1G26830.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
protein binding PMID: 15749712
ubiquitin-protein ligase activity PMID:
cellular_component
ubiquitin ligase complex PMID: 11019805
SCF ubiquitin ligase complex PMID: 15659098
biological_process
ubiquitin-dependent protein catabolic process PMID: 11019805
cell cycle PMID:
endosperm development PMID: 16045478
embryonic development ending in seed dormancy PMID: 16045478
response to red or far red light PMID: 15659098
positive regulation of flower development PMID: 15659098
KEGG pathway This gene participates in 1 pathways:
Pathway Enzyme
Ubiquitin mediated proteolysis cullin 3
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   ethylene   ]

Genotype PMID Type
cul3a-3 19132085 mutant
cul3hyp 19132085 mutant
ein2 cul3hyp 19132085 mutant
cin5-3 cul3hyp 19132085 mutant
etr1 cul3hyp 19132085 mutant
ein3 cul3hyp 19132805 mutant

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT1G26830.1 
length: 2572 
miRNA : ath-miR395b
length: 21 
 
mfe: -29.9 kcal/mol 
p-value: 0.023235 
 
position  1646 
target 5' C    A               A 
           AGUC CCCCGAGC UUUCAG  
           UCAG GGGGUUUG GAAGUC  
miRNA  3' C    G        U        
 
 
target: AT1G26830.1 
length: 2572 
miRNA : ath-miR395c
length: 21 
 
mfe: -29.9 kcal/mol 
p-value: 0.019978 
 
position  1646 
target 5' C    A               A 
           AGUC CCCCGAGC UUUCAG  
           UCAG GGGGUUUG GAAGUC  
miRNA  3' C    G        U        
 
 
target: AT1G26830.1 
length: 2572 
miRNA : ath-miR395f
length: 21 
 
mfe: -29.9 kcal/mol 
p-value: 0.015784 
 
position  1646 
target 5' C    A               A 
           AGUC CCCCGAGC UUUCAG  
           UCAG GGGGUUUG GAAGUC  
miRNA  3' C    G        U        
 
 
target: AT1G26830.1 
length: 2572 
miRNA : ath-miR857
length: 21 
 
mfe: -21.3 kcal/mol 
p-value: 0.161786 
 
position  37 
target 5' U    C         C      U 
           AUAU UCUUCGACG UGCAAA  
           UAUG GGAAGUUGU AUGUUU  
miRNA  3'      U                U 
 
 
target: AT1G26830.1 
length: 2572 
miRNA : ath-miR858
length: 21 
 
mfe: -25.6 kcal/mol 
p-value: 0.039309 
 
position  1946 
target 5' A   A          U  A    U 
           GAG UCGAACAGGC AC GAAA  
           UUC AGCUUGUCUG UG CUUU  
miRNA  3'     C          U         
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_12296
AccessionTaxon
NP_174005 ( AT1G26830 )Arabidopsis thaliana
NP_177125Arabidopsis thaliana
127081Chlamydomonas reinhardtii
NP_001048114Oryza sativa Japonica Group
NP_001054047Oryza sativa Japonica Group
NP_001061094Oryza sativa Japonica Group
e_gw1.03.00.68.1Ostreococcus tauri
e_gw1.311.53.1Physcomitrella patens subsp. patens
estExt_fgenesh1_pm.C_310036Physcomitrella patens subsp. patens
29813.m001468Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
SuperFamilySSF747882.3E-11125376IPR016159Cullin repeat-like-containing domain
PfamPF008880.029631IPR001373Cullin, N-terminal
SuperFamilySSF756321.8E-86368641IPR016158Cullin homology
PROSITEPS500690.0374601IPR016158Cullin homology
SMARTSM001823.6000201503101096E-68404550IPR016158Cullin homology
Gene3DG3DSA:1.10.10.103.5000004329156705E-4561604IPR011991Winged helix-turn-helix transcription repressor DNA-binding
Gene3DG3DSA:1.10.10.101.9999963603453648E-32627732IPR011991Winged helix-turn-helix transcription repressor DNA-binding
PfamPF105577.000000000000002E-24659725IPR019559Cullin protein, neddylation domain
SMARTSM008842.8000050426110003E-32659726IPR019559Cullin protein, neddylation domain