You are querying gene by "AT1G24260".

Locus: AT1G24260 Alias: AGL9

Hormone Evidence Function category Gene Description PMID
auxinMutant Hormone signal transduction Member of the MADs box transcription factor family. SEP3 is redundant with SEP1 and 2. Flowers of SEP1/2/3 triple mutants show a conversion of petals and stamens to sepals.SEP3 forms heterotetrameric complexes with other MADS box family members and binds to the CArG box motif. 19385720

Basic gene information ( show / hide contents )

Locus AT1G24260 | Chromosome: 1 | Strand: -
Description Member of the MADs box transcription factor family. SEP3 is redundant with SEP1 and 2. Flowers of SEP1/2/3 triple mutants show a conversion of petals and stamens to sepals.SEP3 forms heterotetrameric complexes with other MADS box family members and binds to the CArG box motif.
Alias
AGL9( alias )
3-Sep( alias )
Gene model
AT1G24260.1 | From: 8593631 | To: 8595898
AT1G24260.2 | From: 8593631 | To: 8596087
Sequence
AT1G24260.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT1G24260.2 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
DNA binding PMID:
protein binding PMID: 14555696
transcription factor activity PMID: 11118137
cellular_component
nucleus PMID:
biological_process
flower development PMID: 11439126
ovule development PMID: 14555696
regulation of transcription, DNA-dependent PMID:
cell fate specification PMID: 10821278
specification of floral organ identity PMID: 10821278
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   auxin   ]

Genotype PMID Type
sep1 sep2 sep3 19385720 mutant

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT1G24260.1 
length: 948 
miRNA : ath-miR157a
length: 21 
 
mfe: -26.4 kcal/mol 
p-value: 0.003190 
 
position  878 
target 5' A             G   G  U 
           UGUUUUCUGUCUU UGU CA  
           ACGAGAGAUAGAA ACA GU  
miRNA  3' C             G      U 
 
 
target: AT1G24260.1 
length: 948 
miRNA : ath-miR157b
length: 21 
 
mfe: -26.4 kcal/mol 
p-value: 0.003284 
 
position  878 
target 5' A             G   G  U 
           UGUUUUCUGUCUU UGU CA  
           ACGAGAGAUAGAA ACA GU  
miRNA  3' C             G      U 
 
 
target: AT1G24260.1 
length: 948 
miRNA : ath-miR157c
length: 21 
 
mfe: -26.4 kcal/mol 
p-value: 0.002744 
 
position  878 
target 5' A             G   G  U 
           UGUUUUCUGUCUU UGU CA  
           ACGAGAGAUAGAA ACA GU  
miRNA  3' C             G      U 
 
 
target: AT1G24260.1 
length: 948 
miRNA : ath-miR157d
length: 20 
 
mfe: -26.2 kcal/mol 
p-value: 0.001862 
 
position  878 
target 5' A             G   G  U 
           UGUUUUCUGUCUU UGU CA  
           ACGAGAGAUAGAA ACA GU  
miRNA  3' C             G        
 
 
target: AT1G24260.2 
length: 1140 
miRNA : ath-miR157a
length: 21 
 
mfe: -26.4 kcal/mol 
p-value: 0.004043 
 
position  1070 
target 5' A             G   G  U 
           UGUUUUCUGUCUU UGU CA  
           ACGAGAGAUAGAA ACA GU  
miRNA  3' C             G      U 
 
 
target: AT1G24260.2 
length: 1140 
miRNA : ath-miR157b
length: 21 
 
mfe: -26.4 kcal/mol 
p-value: 0.004131 
 
position  1070 
target 5' A             G   G  U 
           UGUUUUCUGUCUU UGU CA  
           ACGAGAGAUAGAA ACA GU  
miRNA  3' C             G      U 
 
 
target: AT1G24260.2 
length: 1140 
miRNA : ath-miR157c
length: 21 
 
mfe: -26.4 kcal/mol 
p-value: 0.003513 
 
position  1070 
target 5' A             G   G  U 
           UGUUUUCUGUCUU UGU CA  
           ACGAGAGAUAGAA ACA GU  
miRNA  3' C             G      U 
 
 
target: AT1G24260.2 
length: 1140 
miRNA : ath-miR157d
length: 20 
 
mfe: -26.2 kcal/mol 
p-value: 0.002431 
 
position  1070 
target 5' A             G   G  U 
           UGUUUUCUGUCUU UGU CA  
           ACGAGAGAUAGAA ACA GU  
miRNA  3' C             G        
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_25697
AccessionTaxon
NP_001119230Arabidopsis thaliana
NP_178466Arabidopsis thaliana
NP_186880Arabidopsis thaliana
NP_564214Arabidopsis thaliana
NP_568322Arabidopsis thaliana
NP_849930Arabidopsis thaliana
NP_850953 ( AT1G24260 )Arabidopsis thaliana
NP_001062335Oryza sativa Japonica Group
NP_001063613Oryza sativa Japonica Group
29790.m000813Ricinus communis
29929.m004629Ricinus communis
NP_973411Arabidopsis thaliana
DatabaseEntry IDE-valueStartEndInterPro IDDescription
SMARTSM004321.3e-41160IPR002100Transcription factor, MADS-box
PROSITEPS5006633.515161IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.6e-32185IPR002100Transcription factor, MADS-box
SMARTSM004321.4999964819632303E-41160IPR002100Transcription factor, MADS-box
PROSITEPS500660.0161IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.6E-32185IPR002100Transcription factor, MADS-box
PRINTSPR004049.3e-33323IPR002100Transcription factor, MADS-box
PROSITEPS00350NA357IPR002100Transcription factor, MADS-box
PRINTSPR004049.30000048475975E-33323IPR002100Transcription factor, MADS-box
PROSITEPS003500.0357IPR002100Transcription factor, MADS-box
PfamPF003192.8e-29959IPR002100Transcription factor, MADS-box
PfamPF003192.2000000000000038E-26959IPR002100Transcription factor, MADS-box
PRINTSPR004049.3e-332338IPR002100Transcription factor, MADS-box
PRINTSPR004049.30000048475975E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004049.3e-333859IPR002100Transcription factor, MADS-box
PRINTSPR004049.30000048475975E-333859IPR002100Transcription factor, MADS-box
PROSITEPS512970.090180IPR002487Transcription factor, K-box
PROSITEPS5129715.10091181IPR002487Transcription factor, K-box
PfamPF014861.2000000000000005E-2491174IPR002487Transcription factor, K-box
PfamPF014864.3e-2793175IPR002487Transcription factor, K-box