You are querying gene by "AT1G24190".

Locus: AT1G24190 Alias: ATSIN3

Hormone Evidence Function category Gene Description PMID
abscisic acidGeneOntology - response to abscisic acid stimulus 15994908

Basic gene information ( show / hide contents )

Locus AT1G24190 | Chromosome: 1 | Strand: -
Description response to abscisic acid stimulus
Alias
ATSIN3( alias )
SIN3( alias )
SNL3( alias )
Gene model
AT1G24190.1 | From: 8563547 | To: 8569985
Sequence
AT1G24190.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
molecular_function_unknown PMID:
cellular_component
nucleus PMID:
biological_process
negative regulation of transcription PMID: 15994908
regulation of transcription, DNA-dependent PMID:
response to abscisic acid stimulus PMID: 15994908
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT1G24190.1 
length: 4362 
miRNA : ath-miR2111a
length: 21 
 
mfe: -23.9 kcal/mol 
p-value: 0.131152 
 
position  1527 
target 5' C    G G      A      U 
           AAAU U AGGAUG CAGGUU  
           UUUG A UCCUAC GUCUAA  
miRNA  3' A    G G             U 
 
 
target: AT1G24190.1 
length: 4362 
miRNA : ath-miR2111b
length: 21 
 
mfe: -23.9 kcal/mol 
p-value: 0.116400 
 
position  1527 
target 5' C    G G      A      U 
           AAAU U AGGAUG CAGGUU  
           UUUG A UCCUAC GUCUAA  
miRNA  3' A    G G             U 
 
 
target: AT1G24190.1 
length: 4362 
miRNA : ath-miR842
length: 21 
 
mfe: -27.1 kcal/mol 
p-value: 0.039694 
 
position  1535 
target 5' A       A       G     A 
           GGAUGAC GGUUUGA C UGG  
           CCUACUG CUAGACU G ACU  
miRNA  3'         C       G U     
 
 
target: AT1G24190.1 
length: 4362 
miRNA : ath-miR865-3p
length: 21 
 
mfe: -23.0 kcal/mol 
p-value: 0.019788 
 
position  2768 
target 5' A       C           U 
           UGGA GA UUUGAGGAAGA  
           ACCU UU AAACUCCUUUU  
miRNA  3' A    A  U           U 
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_11572
AccessionTaxon
NP_172515Arabidopsis thaliana
NP_173829 ( AT1G24190 )Arabidopsis thaliana
NP_176197Arabidopsis thaliana
NP_177163Arabidopsis thaliana
NP_186781Arabidopsis thaliana
NP_197006Arabidopsis thaliana
140464Chlamydomonas reinhardtii
NP_001041795Oryza sativa Japonica Group
estExt_fgenesh1_pg.C_Chr_01.00010278Ostreococcus tauri
e_gw1.363.2.1Physcomitrella patens subsp. patens
estExt_Genewise1.C_2120018Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_1010103Physcomitrella patens subsp. patens
gw1.178.71.1Physcomitrella patens subsp. patens
gw1.403.2.1Physcomitrella patens subsp. patens
29736.m002095Ricinus communis
29822.m003424Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
SuperFamilySSF477622.4E-2426101IPR003822Paired amphipathic helix
Gene3DG3DSA:1.20.1160.114.70000326671344E-2529103IPR003822Paired amphipathic helix
PfamPF026711.3999999999999999E-115499IPR003822Paired amphipathic helix
SuperFamilySSF477621.1E-24112187IPR003822Paired amphipathic helix
Gene3DG3DSA:1.20.1160.117.499996058513585E-24115189IPR003822Paired amphipathic helix
PfamPF026712.1000000000000036E-16140185IPR003822Paired amphipathic helix
SuperFamilySSF477623.8E-13304376IPR003822Paired amphipathic helix
PfamPF026718.900000000000004E-12329371IPR003822Paired amphipathic helix
PfamPF082955.4000000000000184E-39449547IPR013194Histone deacetylase interacting
SMARTSM007611.9000069431526122E-54449549IPR013194Histone deacetylase interacting