You are querying gene by "AT1G23860".

Locus: AT1G23860 Alias: RSZP21

Expression of this gene is regulated by hormone (see microarray data for this gene), but no genetic evidence or Gene Ontology evidence yet supported that this is a hormone-related gene.

Basic gene information ( show / hide contents )

Locus AT1G23860 | Chromosome: 1 | Strand: -
Description Encodes a 9G8-like serine-arginine rich (SR) protein that interacts in vivo with U1-70K, a U1 small nuclear ribonucleoprotein 70-kDa protein that is involved in nuclear precursor mRNA processing.
Alias
RSZP21( alias )
SRZ-21( alias )
SRZ21( alias )
Gene model
AT1G23860.1 | From: 8427345 | To: 8429308
AT1G23860.2 | From: 8427363 | To: 8429230
Sequence
AT1G23860.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT1G23860.2 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
protein binding PMID: 9761791
cellular_component
nucleus PMID: 9761791
nuclear speck PMID: 15133128
biological_process
nuclear mRNA splicing, via spliceosome PMID: 9761791
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT1G23860.1 
length: 1378 
miRNA : ath-miR164a
length: 21 
 
mfe: -31.8 kcal/mol 
p-value: 0.002932 
 
position  874 
target 5' C       G      G      C 
           GCAC UG CCUGCU UCUUCA  
           CGUG AC GGACGA AGAGGU  
miRNA  3' A    C  G               
 
 
target: AT1G23860.1 
length: 1378 
miRNA : ath-miR164b
length: 21 
 
mfe: -31.8 kcal/mol 
p-value: 0.005292 
 
position  874 
target 5' C       G      G      C 
           GCAC UG CCUGCU UCUUCA  
           CGUG AC GGACGA AGAGGU  
miRNA  3' A    C  G               
 
 
target: AT1G23860.1 
length: 1378 
miRNA : ath-miR164c
length: 21 
 
mfe: -32.7 kcal/mol 
p-value: 0.003877 
 
position  873 
target 5' A        G      G      C 
           CGCAC UG CCUGCU UCUUCA  
           GCGUG AC GGACGA AGAGGU  
miRNA  3'       C  G               
 
 
target: AT1G23860.1 
length: 1378 
miRNA : ath-miR2938
length: 21 
 
mfe: -29.7 kcal/mol 
p-value: 0.007005 
 
position  275 
target 5' G             U      A 
           UGGAGCUUUCUCA AAAGAU  
           ACCUUGGGAGAGU UUUCUA  
miRNA  3' G                    G 
 
 
target: AT1G23860.1 
length: 1378 
miRNA : ath-miR854a
length: 21 
 
mfe: -29.1 kcal/mol 
p-value: 0.012702 
 
position  553 
target 5' A              G G   C 
           UCC CCUCCUUAUC U GUU  
           AGG GGAGGGAUAG A UAG  
miRNA  3' G   A          G G     
 
 
target: AT1G23860.1 
length: 1378 
miRNA : ath-miR854b
length: 21 
 
mfe: -29.1 kcal/mol 
p-value: 0.010751 
 
position  553 
target 5' A              G G   C 
           UCC CCUCCUUAUC U GUU  
           AGG GGAGGGAUAG A UAG  
miRNA  3' G   A          G G     
 
 
target: AT1G23860.1 
length: 1378 
miRNA : ath-miR854c
length: 21 
 
mfe: -29.1 kcal/mol 
p-value: 0.012211 
 
position  553 
target 5' A              G G   C 
           UCC CCUCCUUAUC U GUU  
           AGG GGAGGGAUAG A UAG  
miRNA  3' G   A          G G     
 
 
target: AT1G23860.1 
length: 1378 
miRNA : ath-miR854d
length: 21 
 
mfe: -29.1 kcal/mol 
p-value: 0.011020 
 
position  553 
target 5' A              G G   C 
           UCC CCUCCUUAUC U GUU  
           AGG GGAGGGAUAG A UAG  
miRNA  3' G   A          G G     
 
 
target: AT1G23860.1 
length: 1378 
miRNA : ath-miR854e
length: 21 
 
mfe: -29.1 kcal/mol 
p-value: 0.012708 
 
position  553 
target 5' A              G G   C 
           UCC CCUCCUUAUC U GUU  
           AGG GGAGGGAUAG A UAG  
miRNA  3' G   A          G G     
 
 
target: AT1G23860.2 
length: 1358 
miRNA : ath-miR164a
length: 21 
 
mfe: -31.8 kcal/mol 
p-value: 0.002871 
 
position  872 
target 5' C       G      G      C 
           GCAC UG CCUGCU UCUUCA  
           CGUG AC GGACGA AGAGGU  
miRNA  3' A    C  G               
 
 
target: AT1G23860.2 
length: 1358 
miRNA : ath-miR164b
length: 21 
 
mfe: -31.8 kcal/mol 
p-value: 0.005197 
 
position  872 
target 5' C       G      G      C 
           GCAC UG CCUGCU UCUUCA  
           CGUG AC GGACGA AGAGGU  
miRNA  3' A    C  G               
 
 
target: AT1G23860.2 
length: 1358 
miRNA : ath-miR164c
length: 21 
 
mfe: -32.7 kcal/mol 
p-value: 0.003815 
 
position  871 
target 5' A        G      G      C 
           CGCAC UG CCUGCU UCUUCA  
           GCGUG AC GGACGA AGAGGU  
miRNA  3'       C  G               
 
 
target: AT1G23860.2 
length: 1358 
miRNA : ath-miR2938
length: 21 
 
mfe: -29.7 kcal/mol 
p-value: 0.006884 
 
position  273 
target 5' G             U      A 
           UGGAGCUUUCUCA AAAGAU  
           ACCUUGGGAGAGU UUUCUA  
miRNA  3' G                    G 
 
 
target: AT1G23860.2 
length: 1358 
miRNA : ath-miR854a
length: 21 
 
mfe: -29.1 kcal/mol 
p-value: 0.012497 
 
position  551 
target 5' A              G G   C 
           UCC CCUCCUUAUC U GUU  
           AGG GGAGGGAUAG A UAG  
miRNA  3' G   A          G G     
 
 
target: AT1G23860.2 
length: 1358 
miRNA : ath-miR854b
length: 21 
 
mfe: -29.1 kcal/mol 
p-value: 0.010545 
 
position  551 
target 5' A              G G   C 
           UCC CCUCCUUAUC U GUU  
           AGG GGAGGGAUAG A UAG  
miRNA  3' G   A          G G     
 
 
target: AT1G23860.2 
length: 1358 
miRNA : ath-miR854c
length: 21 
 
mfe: -29.1 kcal/mol 
p-value: 0.011998 
 
position  551 
target 5' A              G G   C 
           UCC CCUCCUUAUC U GUU  
           AGG GGAGGGAUAG A UAG  
miRNA  3' G   A          G G     
 
 
target: AT1G23860.2 
length: 1358 
miRNA : ath-miR854d
length: 21 
 
mfe: -29.1 kcal/mol 
p-value: 0.010812 
 
position  551 
target 5' A              G G   C 
           UCC CCUCCUUAUC U GUU  
           AGG GGAGGGAUAG A UAG  
miRNA  3' G   A          G G     
 
 
target: AT1G23860.2 
length: 1358 
miRNA : ath-miR854e
length: 21 
 
mfe: -29.1 kcal/mol 
p-value: 0.012489 
 
position  551 
target 5' A              G G   C 
           UCC CCUCCUUAUC U GUU  
           AGG GGAGGGAUAG A UAG  
miRNA  3' G   A          G G     
 
 
target: AT1G23860.3 
length: 1363 
miRNA : ath-miR164a
length: 21 
 
mfe: -31.8 kcal/mol 
p-value: 0.002886 
 
position  859 
target 5' C       G      G      C 
           GCAC UG CCUGCU UCUUCA  
           CGUG AC GGACGA AGAGGU  
miRNA  3' A    C  G               
 
 
target: AT1G23860.3 
length: 1363 
miRNA : ath-miR164b
length: 21 
 
mfe: -31.8 kcal/mol 
p-value: 0.005220 
 
position  859 
target 5' C       G      G      C 
           GCAC UG CCUGCU UCUUCA  
           CGUG AC GGACGA AGAGGU  
miRNA  3' A    C  G               
 
 
target: AT1G23860.3 
length: 1363 
miRNA : ath-miR164c
length: 21 
 
mfe: -32.7 kcal/mol 
p-value: 0.003830 
 
position  858 
target 5' A        G      G      C 
           CGCAC UG CCUGCU UCUUCA  
           GCGUG AC GGACGA AGAGGU  
miRNA  3'       C  G               
 
 
target: AT1G23860.3 
length: 1363 
miRNA : ath-miR2938
length: 21 
 
mfe: -29.7 kcal/mol 
p-value: 0.006914 
 
position  329 
target 5' G             U      A 
           UGGAGCUUUCUCA AAAGAU  
           ACCUUGGGAGAGU UUUCUA  
miRNA  3' G                    G 
 
 
target: AT1G23860.3 
length: 1363 
miRNA : ath-miR854a
length: 21 
 
mfe: -29.1 kcal/mol 
p-value: 0.012549 
 
position  538 
target 5' A              G G   C 
           UCC CCUCCUUAUC U GUU  
           AGG GGAGGGAUAG A UAG  
miRNA  3' G   A          G G     
 
 
target: AT1G23860.3 
length: 1363 
miRNA : ath-miR854b
length: 21 
 
mfe: -29.1 kcal/mol 
p-value: 0.010596 
 
position  538 
target 5' A              G G   C 
           UCC CCUCCUUAUC U GUU  
           AGG GGAGGGAUAG A UAG  
miRNA  3' G   A          G G     
 
 
target: AT1G23860.3 
length: 1363 
miRNA : ath-miR854c
length: 21 
 
mfe: -29.1 kcal/mol 
p-value: 0.012052 
 
position  538 
target 5' A              G G   C 
           UCC CCUCCUUAUC U GUU  
           AGG GGAGGGAUAG A UAG  
miRNA  3' G   A          G G     
 
 
target: AT1G23860.3 
length: 1363 
miRNA : ath-miR854d
length: 21 
 
mfe: -29.1 kcal/mol 
p-value: 0.010864 
 
position  538 
target 5' A              G G   C 
           UCC CCUCCUUAUC U GUU  
           AGG GGAGGGAUAG A UAG  
miRNA  3' G   A          G G     
 
 
target: AT1G23860.3 
length: 1363 
miRNA : ath-miR854e
length: 21 
 
mfe: -29.1 kcal/mol 
p-value: 0.012544 
 
position  538 
target 5' A              G G   C 
           UCC CCUCCUUAUC U GUU  
           AGG GGAGGGAUAG A UAG  
miRNA  3' G   A          G G     
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_11538
AccessionTaxon
NP_001078474Arabidopsis thaliana
NP_180035Arabidopsis thaliana
NP_194886Arabidopsis thaliana
195844Chlamydomonas reinhardtii
NP_001047400Oryza sativa Japonica Group
NP_001048352Oryza sativa Japonica Group
NP_001057018Oryza sativa Japonica Group
e_gw1.207.127.1Physcomitrella patens subsp. patens
e_gw1.332.33.1Physcomitrella patens subsp. patens
29848.m004475Ricinus communis
195845Chlamydomonas reinhardtii
28610.m000073Ricinus communis
NP_001117342Arabidopsis thaliana
NP_564208Arabidopsis thaliana
NP_973901 ( AT1G23860 )Arabidopsis thaliana
DatabaseEntry IDE-valueStartEndInterPro IDDescription
Gene3DG3DSA:3.30.70.3305.900001049950641E-151104IPR012677Nucleotide-binding, alpha-beta plait
Gene3DG3DSA:3.30.70.3305.900001049950641E-151104IPR012677Nucleotide-binding, alpha-beta plait
PROSITEPS501020.0273IPR000504RNA recognition motif, RNP-1
PROSITEPS501020.0273IPR000504RNA recognition motif, RNP-1
SMARTSM003602.800005042611E-17369IPR000504RNA recognition motif, RNP-1
SMARTSM003602.800005042611E-17369IPR000504RNA recognition motif, RNP-1
PfamPF000762.1000000000000036E-12461IPR000504RNA recognition motif, RNP-1
PfamPF000762.7000000000000042E-12461IPR000504RNA recognition motif, RNP-1
PfamPF000988.500000000000005E-490105IPR001878Zinc finger, CCHC-type
SMARTSM003434.3999996743974664E-490106IPR001878Zinc finger, CCHC-type
PROSITEPS501580.090106IPR001878Zinc finger, CCHC-type
PfamPF000980.00190105IPR001878Zinc finger, CCHC-type
SMARTSM003434.3999996743974664E-490106IPR001878Zinc finger, CCHC-type
PROSITEPS501580.090106IPR001878Zinc finger, CCHC-type