You are querying gene by "AT1G22190".

Locus: AT1G22190 Alias: RAP2.13

Expression of this gene is regulated by hormone (see microarray data for this gene), but no genetic evidence or Gene Ontology evidence yet supported that this is a hormone-related gene.

Basic gene information ( show / hide contents )

Locus AT1G22190 | Chromosome: 1 | Strand: +
Description P2 domain-containing transcription factor, putative; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: RAP2.4 (related to AP2 4); DNA binding / transcription factor (TAIR:AT1G78080.1); Has 3906 Blast hits to 3758 proteins in 206 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 3863; Viruses - 7; Other Eukaryotes - 34 (source: NCBI BLink).
Alias
RAP2.13( alias )
Gene model
AT1G22190.1 | From: 7835771 | To: 7837277
Sequence
AT1G22190.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
DNA binding PMID: 9192694
transcription factor activity PMID: 11118137
cellular_component
nucleus PMID: 9192694
biological_process
regulation of transcription, DNA-dependent PMID:
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT1G22190.1 
length: 1507 
miRNA : ath-miR170
length: 21 
 
mfe: -25.5 kcal/mol 
p-value: 0.018156 
 
position  856 
target 5' A   U                U 
           GAU UUG CGCGGCUUAAUU  
           CUA AAC GUGCCGAGUUAG  
miRNA  3'     U   U            U 
 
 
target: AT1G22190.1 
length: 1507 
miRNA : ath-miR171a
length: 21 
 
mfe: -27.4 kcal/mol 
p-value: 0.010660 
 
position  856 
target 5' A   U                U 
           GAU UU GCGCGGCUUAAUU  
           CUA AA CGCGCCGAGUUAG  
miRNA  3'     U  C             U 
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

No related Ortholog Groups information for this gene.

DatabaseEntry IDE-valueStartEndInterPro IDDescription
Gene3DG3DSA:3.30.730.101.2999992446818318E-2381142IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
SuperFamilySSF541713.8E-2581142IPR016177DNA-binding, integrase-type
SMARTSM003806.499979505417602E-3782145IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
PROSITEPS510320.082139IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
PRINTSPR003672.0999980669153363E-118394IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
PfamPF008475.000000000000002E-1583131IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
PRINTSPR003672.0999980669153363E-11105121IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding