You are querying gene by "AT1G20510".

Locus: AT1G20510 Alias: OPCL1

Hormone Evidence Function category Gene Description PMID
jasmonic acidGeneOntology - jasmonic acid biosynthetic process 16963437

Basic gene information ( show / hide contents )

Locus AT1G20510 | Chromosome: 1 | Strand: -
Description jasmonic acid biosynthetic process
Alias
OPCL1( alias )
Gene model
AT1G20510.1 | From: 7103445 | To: 7105871
AT1G20510.2 | From: 7103449 | To: 7105859
Sequence
AT1G20510.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT1G20510.2 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
4-coumarate-CoA ligase activity PMID:
cellular_component
peroxisome PMID: 16963437
biological_process
jasmonic acid biosynthetic process PMID: 16963437
phenylpropanoid metabolic process PMID:
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT1G20510.1 
length: 1857 
miRNA : ath-miR414
length: 21 
 
mfe: -24.6 kcal/mol 
p-value: 0.011431 
 
position  521 
target 5' G      A  U            U 
           UGA GA GA UGGUGGAGAUGA  
           ACU CU CU ACUACUUCUACU  
miRNA  3'     G  A                 
 
 
target: AT1G20510.2 
length: 1915 
miRNA : ath-miR414
length: 21 
 
mfe: -24.6 kcal/mol 
p-value: 0.011818 
 
position  509 
target 5' G      A  U            U 
           UGA GA GA UGGUGGAGAUGA  
           ACU CU CU ACUACUUCUACU  
miRNA  3'     G  A                 
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_10074
AccessionTaxon
NP_173472Arabidopsis thaliana
NP_173474Arabidopsis thaliana
NP_198628Arabidopsis thaliana
NP_564115 ( AT1G20510 )Arabidopsis thaliana
NP_973872Arabidopsis thaliana
NP_001046069Oryza sativa Japonica Group
NP_001047819Oryza sativa Japonica Group
NP_001058252Oryza sativa Japonica Group
NP_001061353Oryza sativa Japonica Group
NP_001061935Oryza sativa Japonica Group
e_gw1.02.00.157.1Ostreococcus tauri
e_gw1.167.67.1Physcomitrella patens subsp. patens
estExt_fgenesh1_pm.C_200030Physcomitrella patens subsp. patens
estExt_fgenesh2_pg.C_710053Physcomitrella patens subsp. patens
fgenesh1_pg.scaffold_185000045Physcomitrella patens subsp. patens
28429.m000109Ricinus communis
30073.m002251Ricinus communis
30131.m006921Ricinus communis
NP_192425Arabidopsis thaliana
NP_190468Arabidopsis thaliana
NP_001054304Oryza sativa Japonica Group
e_gw1.18.145.1Physcomitrella patens subsp. patens
30147.m013735Ricinus communis
30190.m011196Ricinus communis
29589.m001235Ricinus communis
30078.m002285Ricinus communis
NP_001048992Oryza sativa Japonica Group
NP_175579Arabidopsis thaliana
NP_176686Arabidopsis thaliana
NP_188761Arabidopsis thaliana
NP_849844Arabidopsis thaliana
NP_001077697Arabidopsis thaliana
NP_188760Arabidopsis thaliana
NP_849793Arabidopsis thaliana
e_gw1.12.278.1Physcomitrella patens subsp. patens
e_gw1.38.65.1Physcomitrella patens subsp. patens
e_gw1.6.71.1Physcomitrella patens subsp. patens
estExt_Genewise1.C_520075Physcomitrella patens subsp. patens
NP_001048867Oryza sativa Japonica Group
30170.m014327Ricinus communis
NP_173473Arabidopsis thaliana
113915Chlamydomonas reinhardtii
28872.m000246Ricinus communis
gw1.04.00.473.1Ostreococcus tauri
29929.m004700Ricinus communis
30190.m010972Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PfamPF005018.2e-10659471IPR000873AMP-dependent synthetase/ligase
PfamPF005013.900000000000007E-10359471IPR000873AMP-dependent synthetase/ligase
PROSITEPS00455NA194205IPR020845AMP-binding, conserved site
PROSITEPS004550.0194205IPR020845AMP-binding, conserved site