You are querying gene by "AT1G20510".

Locus: AT1G20510 Alias: OPCL1

Hormone Evidence Function category Gene Description PMID
jasmonic acidGeneOntology - jasmonic acid biosynthetic process 16963437

Basic gene information ( show / hide contents )

Locus AT1G20510 | Chromosome: 1 | Strand: -
Description jasmonic acid biosynthetic process
OPCL1( alias )
Gene model
AT1G20510.1 | From: 7103445 | To: 7105871
AT1G20510.2 | From: 7103449 | To: 7105859
AT1G20510.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT1G20510.2 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
4-coumarate-CoA ligase activity PMID:
peroxisome PMID: 16963437
jasmonic acid biosynthetic process PMID: 16963437
phenylpropanoid metabolic process PMID:
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

Hormone treatment related datasets  
Abiotic stress treatment related datasets (in root)  
Abiotic stress treatment related datasets (in shoot)  
Development related datasets  

miRNA interaction information for this gene

(Note:target use cDNA sequence)
target: AT1G20510.1 
length: 1857 
miRNA : ath-miR414
length: 21 
mfe: -24.6 kcal/mol 
p-value: 0.011431 
position  521 
target 5' G      A  U            U 
miRNA  3'     G  A                 
target: AT1G20510.2 
length: 1915 
miRNA : ath-miR414
length: 21 
mfe: -24.6 kcal/mol 
p-value: 0.011818 
position  509 
target 5' G      A  U            U 
miRNA  3'     G  A                 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_10074
NP_173472Arabidopsis thaliana
NP_173474Arabidopsis thaliana
NP_198628Arabidopsis thaliana
NP_564115 ( AT1G20510 )Arabidopsis thaliana
NP_973872Arabidopsis thaliana
NP_001046069Oryza sativa Japonica Group
NP_001047819Oryza sativa Japonica Group
NP_001058252Oryza sativa Japonica Group
NP_001061353Oryza sativa Japonica Group
NP_001061935Oryza sativa Japonica Group
e_gw1. tauri
e_gw1.167.67.1Physcomitrella patens subsp. patens
estExt_fgenesh1_pm.C_200030Physcomitrella patens subsp. patens
estExt_fgenesh2_pg.C_710053Physcomitrella patens subsp. patens
fgenesh1_pg.scaffold_185000045Physcomitrella patens subsp. patens
28429.m000109Ricinus communis
30073.m002251Ricinus communis
30131.m006921Ricinus communis
NP_192425Arabidopsis thaliana
NP_190468Arabidopsis thaliana
NP_001054304Oryza sativa Japonica Group
e_gw1.18.145.1Physcomitrella patens subsp. patens
30147.m013735Ricinus communis
30190.m011196Ricinus communis
29589.m001235Ricinus communis
30078.m002285Ricinus communis
NP_001048992Oryza sativa Japonica Group
NP_175579Arabidopsis thaliana
NP_176686Arabidopsis thaliana
NP_188761Arabidopsis thaliana
NP_849844Arabidopsis thaliana
NP_001077697Arabidopsis thaliana
NP_188760Arabidopsis thaliana
NP_849793Arabidopsis thaliana
e_gw1.12.278.1Physcomitrella patens subsp. patens
e_gw1.38.65.1Physcomitrella patens subsp. patens
e_gw1.6.71.1Physcomitrella patens subsp. patens
estExt_Genewise1.C_520075Physcomitrella patens subsp. patens
NP_001048867Oryza sativa Japonica Group
30170.m014327Ricinus communis
NP_173473Arabidopsis thaliana
113915Chlamydomonas reinhardtii
28872.m000246Ricinus communis
gw1.04.00.473.1Ostreococcus tauri
29929.m004700Ricinus communis
30190.m010972Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PfamPF005018.2e-10659471IPR000873AMP-dependent synthetase/ligase
PfamPF005013.900000000000007E-10359471IPR000873AMP-dependent synthetase/ligase
PROSITEPS00455NA194205IPR020845AMP-binding, conserved site
PROSITEPS004550.0194205IPR020845AMP-binding, conserved site