You are querying gene by "AT1G19850".

Locus: AT1G19850 Alias: ARF5

Hormone Evidence Function category Gene Description PMID
auxinMutant Hormone signal transduction transcription factor 9482737
GeneOntology - response to auxin stimulus 11283339

Basic gene information ( show / hide contents )

Locus AT1G19850 | Chromosome: 1 | Strand: +
Description transcription factor
Alias
ARF5( alias )
IAA24( alias )
MP( alias )
Gene model
AT1G19850.1 | From: 6886870 | To: 6891365
Sequence
AT1G19850.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
transcription factor activity PMID: 9482737
cellular_component
nucleus PMID: 9482737
biological_process
xylem and phloem pattern formation PMID: 8904808
meristem development PMID: 17553903
response to auxin stimulus PMID: 11283339
leaf vascular tissue pattern formation PMID: 17553903
root development PMID: 17553903
flower development PMID: 17553903
embryonic development PMID: 17553903
longitudinal axis specification PMID: 8904808
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   auxin   ]

Genotype PMID Type
arf5/mp 9482737 mutant

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT1G19850.1 
length: 3375 
miRNA : ath-miR858
length: 21 
 
mfe: -26.2 kcal/mol 
p-value: 0.039961 
 
position  3102 
target 5' U      C         G     A 
           GAGGUC AGCAGAUGA UGAAG  
           UUCCAG UUGUCUGUU GCUUU  
miRNA  3'        C                 
 
 
Gene1Gene2Positive/NegativeCategoryEnzyme activityEvidencePMID
AT1G19850AT1G74740PositivetransciptN/Amolecular18599455
AT1G19850AT2G14610negativetransciptN/Abiochem17276977
AT1G19850AT4G30610PositivetransciptN/AGO/othersN/A
AT1G19850AT5G18560PositivetransciptN/Amutance17630277
AT1G19850CBF/DREBnegativetransciptN/Abiochem17276977

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_19971
AccessionTaxon
NP_001031115Arabidopsis thaliana
NP_001078672Arabidopsis thaliana
NP_174323Arabidopsis thaliana
NP_198518Arabidopsis thaliana
NP_001045993Oryza sativa Japonica Group
NP_001054222Oryza sativa Japonica Group
NP_001058360Oryza sativa Japonica Group
NP_001067266Oryza sativa Japonica Group
e_gw1.119.103.1Physcomitrella patens subsp. patens
e_gw1.133.91.1Physcomitrella patens subsp. patens
e_gw1.65.212.1Physcomitrella patens subsp. patens
e_gw1.86.122.1Physcomitrella patens subsp. patens
estExt_fgenesh1_pg.C_1630077Physcomitrella patens subsp. patens
gw1.6.284.1Physcomitrella patens subsp. patens
29599.m000177Ricinus communis
29769.m000463Ricinus communis
30170.m014161Ricinus communis
NP_173414 ( AT1G19850 )Arabidopsis thaliana
NP_001054169Oryza sativa Japonica Group
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PfamPF023623.000000000000004E-20158259IPR003340Transcriptional factor B3
PROSITEPS508630.0158260IPR003340Transcriptional factor B3
PfamPF065079.699999999999892E-33284367IPR010525Auxin response factor
PfamPF023091.6000000000000009E-22766882IPR003311AUX/IAA protein
PROSITEPS509620.0794876IPR011525Aux/IAA-ARF-dimerisation