You are querying gene by "AT1G19220".

Locus: AT1G19220 Alias: ARF11

Hormone Evidence Function category Gene Description PMID
ethyleneGeneOntology - response to ethylene stimulus 16461383
auxinMutant Hormone signal transduction transcription factor 15659631
GeneOntology - response to auxin stimulus 15659631

Basic gene information ( show / hide contents )

Locus AT1G19220 | Chromosome: 1 | Strand: -
Description transcription factor
Alias
ARF11( alias )
ARF19( alias )
IAA22( alias )
Gene model
AT1G19220.1 | From: 6628059 | To: 6632988
Sequence
AT1G19220.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
DNA binding PMID: 17259263
transcription factor activity PMID: 11118137
cellular_component
nucleus PMID: 17259263
biological_process
response to auxin stimulus PMID: 15659631
lateral root primordium development PMID: 17259263
lateral root development PMID: 15960621
response to ethylene stimulus PMID: 16461383
leaf development PMID: 15960621
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   auxin   ]

Genotype PMID Type
ARF19-D 15659631 mutant
arf19 15659631 mutant
nph4arf19 15659631 mutant

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT1G19220.1 
length: 3896 
miRNA : ath-miR778
length: 21 
 
mfe: -25.5 kcal/mol 
p-value: 0.041850 
 
position  1331 
target 5' A C  G G             A 
           G UG A AUAGGCCAAGCCG  
           C AC U UAUUUGGUUCGGU  
miRNA  3' G C  A G               
 
 
target: AT1G19220.1 
length: 3896 
miRNA : ath-miR834
length: 21 
 
mfe: -28.1 kcal/mol 
p-value: 0.031074 
 
position  1909 
target 5' G   G            A    A 
           UAC AUUGCUGUUGCU ACCA  
           AUG UGGCGAUGACGA UGGU  
miRNA  3' A   G                   
 
 
Gene1Gene2Positive/NegativeCategoryEnzyme activityEvidencePMID
AT1G19220AT1G74740PositivetransciptN/Amolecular18599455
AT1G19220AT2G14610negativetransciptN/Abiochem17276977
AT1G19220AT3G15510PositivetransciptN/Amolecular17672844
AT1G19220AT4G30610PositivetransciptN/AGO/othersN/A
AT1G19220AT5G18560PositivetransciptN/Amutance17630277
AT1G19220CBF/DREBnegativetransciptN/Abiochem17276977

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_26771
AccessionTaxon
NP_173356 ( AT1G19220 )Arabidopsis thaliana
NP_568400Arabidopsis thaliana
NP_851046Arabidopsis thaliana
NP_851047Arabidopsis thaliana
NP_001045857Oryza sativa Japonica Group
NP_001057054Oryza sativa Japonica Group
NP_001058492Oryza sativa Japonica Group
NP_001062268Oryza sativa Japonica Group
29739.m003713Ricinus communis
30185.m000956Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PfamPF023625.000000000000014E-19126227IPR003340Transcriptional factor B3
PROSITEPS508630.0126228IPR003340Transcriptional factor B3
PfamPF065071.600000000000001E-33252334IPR010525Auxin response factor
PfamPF023098.499999999999947E-219531047IPR003311AUX/IAA protein
PROSITEPS509620.09591041IPR011525Aux/IAA-ARF-dimerisation