You are querying gene by "AT1G18080".

Locus: AT1G18080 Alias: ATARCA

Hormone Evidence Function category Gene Description PMID
abscisic acidTransgenic Hormone signal transduction Encodes the Arabidopsis thaliana homolog of the tobacco WD-40 repeat ArcA gene. 19584117
Mutant Hormone signal transduction Encodes the Arabidopsis thaliana homolog of the tobacco WD-40 repeat ArcA gene. 19584117

Basic gene information ( show / hide contents )

Locus AT1G18080 | Chromosome: 1 | Strand: +
Description Encodes the Arabidopsis thaliana homolog of the tobacco WD-40 repeat ArcA gene.
Alias
ATARCA( alias )
Gene model
AT1G18080.1 | From: 6222194 | To: 6224144
Sequence
AT1G18080.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
nucleotide binding PMID:
cellular_component
heterotrimeric G-protein complex PMID:
biological_process
biological_process_unknown PMID:
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   abscisic acid   ]

Genotype PMID Type
rack1a-1 19584117 mutant
rack1a-2 19584117 mutant
rack1a-1 rack1b-2 19584117 mutant
rack1a-1 rack1c-2 19584117 mutant
AOX2-4 19584117 transgenic
AOX9-6 19584117 transgenic
AOX5-6 19584117 transgenic

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT1G18080.1 
length: 1358 
miRNA : ath-miR401
length: 21 
 
mfe: -27.1 kcal/mol 
p-value: 0.008706 
 
position  693 
target 5' U  C               A  U 
           UG UGGUC ACACCGGUU CG  
           AC GCCAG UGUGGUCAA GC  
miRNA  3'    A     C         A    
 
 
target: AT1G18080.1 
length: 1358 
miRNA : ath-miR870
length: 21 
 
mfe: -21.5 kcal/mol 
p-value: 0.076661 
 
position  556 
target 5' A   G U           U     G 
           GGU G GAGGGACACCG GAUUG  
           CUA C UUCUUUGUGGU UUAAU  
miRNA  3'     G                     
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_11021
AccessionTaxon
NP_173248 ( AT1G18080 )Arabidopsis thaliana
NP_175296Arabidopsis thaliana
NP_188441Arabidopsis thaliana
105734Chlamydomonas reinhardtii
NP_001043910Oryza sativa Japonica Group
NP_001056254Oryza sativa Japonica Group
estExt_fgenesh1_pm.C_Chr_13.00010026Ostreococcus tauri
estExt_Genewise1.C_2590023Physcomitrella patens subsp. patens
estExt_Genewise1.C_2760003Physcomitrella patens subsp. patens
estExt_fgenesh1_pg.C_150112Physcomitrella patens subsp. patens
29654.m000305Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
SuperFamilySSF509781.6E-722322IPR011046WD40 repeat-like-containing domain
Gene3DG3DSA:2.130.10.101.5000096574878445E-704322IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003209.59999914716171E-4444IPR001680WD40 repeat
PfamPF004000.15744IPR019781WD40 repeat, subgroup
PROSITEPS500820.01153IPR019782WD40 repeat 2
PROSITEPS502940.011327IPR017986WD40-repeat-containing domain
SMARTSM003208.299995811800076E-65291IPR001680WD40 repeat
PfamPF004006.199999999999993E-65691IPR019781WD40 repeat, subgroup
PROSITEPS500820.059100IPR019782WD40 repeat 2
PROSITEPS006780.07892IPR019775WD40 repeat, conserved site
SMARTSM003202.1999990098070814E-994133IPR001680WD40 repeat
PfamPF004009.100000000000009E-897133IPR019781WD40 repeat, subgroup
PROSITEPS500820.0101133IPR019782WD40 repeat 2
PRINTSPR003201.499999775833517E-8120134IPR020472G-protein beta WD-40 repeat, region
PROSITEPS006780.0120134IPR019775WD40 repeat, conserved site
SMARTSM003206.699996876259989E-9135180IPR001680WD40 repeat
PROSITEPS500820.0146189IPR019782WD40 repeat 2
PfamPF004001.1E-8147180IPR019781WD40 repeat, subgroup
PRINTSPR003201.499999775833517E-8167181IPR020472G-protein beta WD-40 repeat, region
PROSITEPS006780.0167181IPR019775WD40 repeat, conserved site
SMARTSM003208.399998585923064E-11183222IPR001680WD40 repeat
PfamPF004004.4000000000000055E-7185222IPR019781WD40 repeat, subgroup
PROSITEPS500820.0190231IPR019782WD40 repeat 2
PRINTSPR003201.499999775833517E-8209223IPR020472G-protein beta WD-40 repeat, region
PROSITEPS006780.0209223IPR019775WD40 repeat, conserved site
SMARTSM003200.04200000019107262225262IPR001680WD40 repeat
PfamPF004005.2227262IPR019781WD40 repeat, subgroup
SMARTSM003200.0859999956543673288323IPR001680WD40 repeat
PfamPF004000.22000000000000003298322IPR019781WD40 repeat, subgroup
PROSITEPS500820.0299327IPR019782WD40 repeat 2