You are querying gene by "AT1G18080".

Locus: AT1G18080 Alias: ATARCA

Hormone Evidence Function category Gene Description PMID
abscisic acidTransgenic Hormone signal transduction Encodes the Arabidopsis thaliana homolog of the tobacco WD-40 repeat ArcA gene. 19584117
Mutant Hormone signal transduction Encodes the Arabidopsis thaliana homolog of the tobacco WD-40 repeat ArcA gene. 19584117

Basic gene information ( show / hide contents )

Locus AT1G18080 | Chromosome: 1 | Strand: +
Description Encodes the Arabidopsis thaliana homolog of the tobacco WD-40 repeat ArcA gene.
ATARCA( alias )
Gene model
AT1G18080.1 | From: 6222194 | To: 6224144
AT1G18080.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
nucleotide binding PMID:
heterotrimeric G-protein complex PMID:
biological_process_unknown PMID:
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   abscisic acid   ]

Genotype PMID Type
rack1a-1 19584117 mutant
rack1a-2 19584117 mutant
rack1a-1 rack1b-2 19584117 mutant
rack1a-1 rack1c-2 19584117 mutant
AOX2-4 19584117 transgenic
AOX9-6 19584117 transgenic
AOX5-6 19584117 transgenic

Microarray data for this gene

Hormone treatment related datasets  
Abiotic stress treatment related datasets (in root)  
Abiotic stress treatment related datasets (in shoot)  
Development related datasets  

miRNA interaction information for this gene

(Note:target use cDNA sequence)
target: AT1G18080.1 
length: 1358 
miRNA : ath-miR401
length: 21 
mfe: -27.1 kcal/mol 
p-value: 0.008706 
position  693 
target 5' U  C               A  U 
miRNA  3'    A     C         A    
target: AT1G18080.1 
length: 1358 
miRNA : ath-miR870
length: 21 
mfe: -21.5 kcal/mol 
p-value: 0.076661 
position  556 
target 5' A   G U           U     G 
miRNA  3'     G                     

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_11021
NP_173248 ( AT1G18080 )Arabidopsis thaliana
NP_175296Arabidopsis thaliana
NP_188441Arabidopsis thaliana
105734Chlamydomonas reinhardtii
NP_001043910Oryza sativa Japonica Group
NP_001056254Oryza sativa Japonica Group
estExt_fgenesh1_pm.C_Chr_13.00010026Ostreococcus tauri
estExt_Genewise1.C_2590023Physcomitrella patens subsp. patens
estExt_Genewise1.C_2760003Physcomitrella patens subsp. patens
estExt_fgenesh1_pg.C_150112Physcomitrella patens subsp. patens
29654.m000305Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
SuperFamilySSF509781.6E-722322IPR011046WD40 repeat-like-containing domain
Gene3DG3DSA: repeat-like-containing domain
SMARTSM003209.59999914716171E-4444IPR001680WD40 repeat
PfamPF004000.15744IPR019781WD40 repeat, subgroup
PROSITEPS500820.01153IPR019782WD40 repeat 2
PROSITEPS502940.011327IPR017986WD40-repeat-containing domain
SMARTSM003208.299995811800076E-65291IPR001680WD40 repeat
PfamPF004006.199999999999993E-65691IPR019781WD40 repeat, subgroup
PROSITEPS500820.059100IPR019782WD40 repeat 2
PROSITEPS006780.07892IPR019775WD40 repeat, conserved site
SMARTSM003202.1999990098070814E-994133IPR001680WD40 repeat
PfamPF004009.100000000000009E-897133IPR019781WD40 repeat, subgroup
PROSITEPS500820.0101133IPR019782WD40 repeat 2
PRINTSPR003201.499999775833517E-8120134IPR020472G-protein beta WD-40 repeat, region
PROSITEPS006780.0120134IPR019775WD40 repeat, conserved site
SMARTSM003206.699996876259989E-9135180IPR001680WD40 repeat
PROSITEPS500820.0146189IPR019782WD40 repeat 2
PfamPF004001.1E-8147180IPR019781WD40 repeat, subgroup
PRINTSPR003201.499999775833517E-8167181IPR020472G-protein beta WD-40 repeat, region
PROSITEPS006780.0167181IPR019775WD40 repeat, conserved site
SMARTSM003208.399998585923064E-11183222IPR001680WD40 repeat
PfamPF004004.4000000000000055E-7185222IPR019781WD40 repeat, subgroup
PROSITEPS500820.0190231IPR019782WD40 repeat 2
PRINTSPR003201.499999775833517E-8209223IPR020472G-protein beta WD-40 repeat, region
PROSITEPS006780.0209223IPR019775WD40 repeat, conserved site
SMARTSM003200.04200000019107262225262IPR001680WD40 repeat
PfamPF004005.2227262IPR019781WD40 repeat, subgroup
SMARTSM003200.0859999956543673288323IPR001680WD40 repeat
PfamPF004000.22000000000000003298322IPR019781WD40 repeat, subgroup
PROSITEPS500820.0299327IPR019782WD40 repeat 2