You are querying gene by "AT1G17440".

Locus: AT1G17440 Alias: EER4

Hormone Evidence Function category Gene Description PMID
ethyleneMutant Hormone biosynthesis EER4/TAF12B (TBP-ASSOCIATED FACTOR 12B); transcription initiation factor; similar to TAF12/TAFII58 (TBP-ASSOCIATED FACTOR 12), DNA binding / transcription initiation factor [Arabidopsis thaliana] (TAIR:AT3G10070.1); similar to TATA binding protein associated factor [Solanum tuberosum] (GB:BAE46416.1); contains InterPro domain Transcription initiation factor TFIID; (InterPro:IPR003228); contains InterPro domain Histone-fold; (InterPro:IPR009072) 17526916

Basic gene information ( show / hide contents )

Locus AT1G17440 | Chromosome: 1 | Strand: -
Description EER4/TAF12B (TBP-ASSOCIATED FACTOR 12B); transcription initiation factor; similar to TAF12/TAFII58 (TBP-ASSOCIATED FACTOR 12), DNA binding / transcription initiation factor [Arabidopsis thaliana] (TAIR:AT3G10070.1); similar to TATA binding protein associated factor [Solanum tuberosum] (GB:BAE46416.1); contains InterPro domain Transcription initiation factor TFIID; (InterPro:IPR003228); contains InterPro domain Histone-fold; (InterPro:IPR009072)
Alias
EER4( alias )
TAF12b( alias )
Gene model
AT1G17440.1 | From: 5983977 | To: 5987777
AT1G17440.2 | From: 5984154 | To: 5987764
Sequence
AT1G17440.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT1G17440.2 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
transcription initiation factor activity PMID:
cellular_component
transcription factor TFIID complex PMID:
biological_process
transcription initiation PMID:
KEGG pathway This gene participates in 1 pathways:
Pathway Enzyme
Basal transcription factors transcription initiation factor TFIID subunit D10
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   ethylene   ]

Genotype PMID Type
eer4 17526916 mutant
eer4 ctr1 17526916 mutant
eer4 ein2-5 17526916 mutant
eer4 ein3-1 17526916 mutant

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT1G17440.1 
length: 2497 
miRNA : ath-miR156g
length: 20 
 
mfe: -26.1 kcal/mol 
p-value: 0.028978 
 
position  615 
target 5' U      A       A    A 
           UGCUCA UCUCUUC G CG  
           ACGAGU AGAGAAG C GC  
miRNA  3' C      G       A A    
 
 
target: AT1G17440.2 
length: 2406 
miRNA : ath-miR156g
length: 20 
 
mfe: -26.1 kcal/mol 
p-value: 0.027831 
 
position  602 
target 5' U      A       A    A 
           UGCUCA UCUCUUC G CG  
           ACGAGU AGAGAAG C GC  
miRNA  3' C      G       A A    
 
 
Gene1Gene2Positive/NegativeCategoryEnzyme activityEvidencePMID
AT1G17440AT3G20770nondirectionprotein interactionN/Amutance17526916

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_12871
AccessionTaxon
NP_566367Arabidopsis thaliana
172500Chlamydomonas reinhardtii
NP_001044860Oryza sativa Japonica Group
fgenesh1_pg.C_Chr_01.0001000205Ostreococcus tauri
gw1.303.53.1Physcomitrella patens subsp. patens
29625.m000678Ricinus communis
NP_564023Arabidopsis thaliana
NP_849680 ( AT1G17440 )Arabidopsis thaliana
NP_001044793Oryza sativa Japonica Group
29706.m001291Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
Gene3DG3DSA:1.10.20.103.499994668639488E-24523598IPR009072Histone-fold
SuperFamilySSF471133.5E-19525598IPR009072Histone-fold
PfamPF038472.7000000000000044E-28529596IPR003228Transcription initiation factor TFIID