You are querying gene by "AT1G17420".

Locus: AT1G17420 Alias: LOX3

Hormone Evidence Function category Gene Description PMID
jasmonic acidGeneOntology - jasmonic acid biosynthetic process 8702864

Basic gene information ( show / hide contents )

Locus AT1G17420 | Chromosome: 1 | Strand: +
Description jasmonic acid biosynthetic process
Alias
LOX3( alias )
Gene model
AT1G17420.1 | From: 5977404 | To: 5981473
Sequence
AT1G17420.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen PMID:
metal ion binding PMID:
iron ion binding PMID:
lipoxygenase activity PMID:
cellular_component
chloroplast PMID:
biological_process
response to wounding PMID: 9232884
defense response PMID: 9232884
jasmonic acid biosynthetic process PMID: 8702864
growth PMID: 9232884
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT1G17420.1 
length: 2957 
miRNA : ath-miR858
length: 21 
 
mfe: -25.2 kcal/mol 
p-value: 0.053867 
 
position  2705 
target 5' A   A            A    G 
           GAG UCGGACGGAUAG GAAA  
           UUC AGCUUGUCUGUU CUUU  
miRNA  3'     C            G      
 
 
target: AT1G17420.1 
length: 2957 
miRNA : ath-miR869.2
length: 21 
 
mfe: -25.1 kcal/mol 
p-value: 0.065579 
 
position  1439 
target 5' G      A        C   A  U 
           GUCAGC AUCUUGAC CCA GA  
           CAGUUG UAGAGUUG GGU CU  
miRNA  3'        A        U        
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_11048
AccessionTaxon
29468.m000030Ricinus communis
29726.m003891Ricinus communis
29808.m000898Ricinus communis
29851.m002422Ricinus communis
29851.m002424Ricinus communis
29929.m004699Ricinus communis
30128.m008781Ricinus communis
NP_176923Arabidopsis thaliana
NP_177396Arabidopsis thaliana
NP_188879Arabidopsis thaliana
NP_564021 ( AT1G17420 )Arabidopsis thaliana
NP_566875Arabidopsis thaliana
144677Chlamydomonas reinhardtii
NP_001049158Oryza sativa Japonica Group
NP_001050993Oryza sativa Japonica Group
NP_001050995Oryza sativa Japonica Group
NP_001052913Oryza sativa Japonica Group
NP_001055143Oryza sativa Japonica Group
NP_001062199Oryza sativa Japonica Group
NP_001062200Oryza sativa Japonica Group
NP_001068135Oryza sativa Japonica Group
e_gw1.171.1.1Physcomitrella patens subsp. patens
e_gw1.21.1.1Physcomitrella patens subsp. patens
e_gw1.434.22.1Physcomitrella patens subsp. patens
e_gw1.97.30.1Physcomitrella patens subsp. patens
estExt_Genewise1.C_4190013Physcomitrella patens subsp. patens
estExt_fgenesh1_pg.C_4190004Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_2320058Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_4190009Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_4190017Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_700115Physcomitrella patens subsp. patens
29680.m001710Ricinus communis
30152.m002449Ricinus communis
30169.m006387Ricinus communis
30169.m006389Ricinus communis
30178.m000859Ricinus communis
NP_175900Arabidopsis thaliana
NP_001046180Oryza sativa Japonica Group
NP_001050990Oryza sativa Japonica Group
NP_001051212Oryza sativa Japonica Group
NP_001067011Oryza sativa Japonica Group
NP_001067015Oryza sativa Japonica Group
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PANTHERPTHR117710.051919IPR000907Lipoxygenase
Gene3DG3DSA:2.60.60.201.499996481963175E-5379244IPR001024Lipoxygenase, LH2
SuperFamilySSF497234.8E-4983226IPR008976Lipase/lipooxygenase, PLAT/LH2
SMARTSM003081.400005069073092E-4984223IPR001024Lipoxygenase, LH2
PROSITEPS500950.086222IPR001024Lipoxygenase, LH2
PfamPF014775.2999999999999875E-14120220IPR001024Lipoxygenase, LH2
PRINTSPR004686.299981794347407E-66192210IPR001246Lipoxygenase, plant
PRINTSPR004686.299981794347407E-66218239IPR001246Lipoxygenase, plant
PROSITEPS513930.0225919IPR013819Lipoxygenase, C-terminal
SuperFamilySSF484840.0227919IPR013819Lipoxygenase, C-terminal
PfamPF003050.0234903IPR013819Lipoxygenase, C-terminal
PRINTSPR004686.299981794347407E-66257273IPR001246Lipoxygenase, plant
PRINTSPR004686.299981794347407E-66289308IPR001246Lipoxygenase, plant
PRINTSPR004686.299981794347407E-66355376IPR001246Lipoxygenase, plant
PRINTSPR004686.299981794347407E-66404420IPR001246Lipoxygenase, plant
PRINTSPR004686.299981794347407E-66443462IPR001246Lipoxygenase, plant
PRINTSPR004686.299981794347407E-66510534IPR001246Lipoxygenase, plant
PRINTSPR000876.900014785635071E-20555572IPR013819Lipoxygenase, C-terminal
PRINTSPR000876.900014785635071E-20573590IPR013819Lipoxygenase, C-terminal
PROSITEPS007110.0573587IPR020833Lipoxygenase, iron binding site
PRINTSPR000876.900014785635071E-20593613IPR013819Lipoxygenase, C-terminal
PROSITEPS000810.0600610IPR020834Lipoxygenase, conserved site
PRINTSPR004686.299981794347407E-66831845IPR001246Lipoxygenase, plant