You are querying gene by "AT1G16390".

Locus: AT1G16390 Alias: ATOCT3

Hormone Evidence Function category Gene Description PMID
brassinosteroidMutant Hormone signal transduction BIN2 homolog genes 16672972

Basic gene information ( show / hide contents )

Locus AT1G16390 | Chromosome: 1 | Strand: +
Description BIN2 homolog genes
Alias
ATOCT3( alias )
Gene model
AT1G16390.1 | From: 5602867 | To: 5604657
Sequence
AT1G16390.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
carbohydrate transmembrane transporter activity PMID:
sugar:hydrogen symporter activity PMID:
cellular_component
membrane PMID:
biological_process
transport PMID:
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   brassinosteroid   ]

Genotype PMID Type
bin2 and two homolog triple mutant 16672972 mutant
At1g16390 mutant 16672972 mutant

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT1G16390.1 
length: 1791 
miRNA : ath-miR395a
length: 21 
 
mfe: -29.5 kcal/mol 
p-value: 0.006981 
 
position  166 
target 5' C             C       U 
           AGUUUCUCCAAGC GCUUUAG  
           UCAAGGGGGUUUG UGAAGUC  
miRNA  3' C                       
 
 
target: AT1G16390.1 
length: 1791 
miRNA : ath-miR395b
length: 21 
 
mfe: -29.1 kcal/mol 
p-value: 0.021476 
 
position  166 
target 5' C             C       U 
           AGUUUCUCCAAGC GCUUUAG  
           UCAGGGGGGUUUG UGAAGUC  
miRNA  3' C                       
 
 
target: AT1G16390.1 
length: 1791 
miRNA : ath-miR395c
length: 21 
 
mfe: -29.1 kcal/mol 
p-value: 0.018219 
 
position  166 
target 5' C             C       U 
           AGUUUCUCCAAGC GCUUUAG  
           UCAGGGGGGUUUG UGAAGUC  
miRNA  3' C                       
 
 
target: AT1G16390.1 
length: 1791 
miRNA : ath-miR395d
length: 21 
 
mfe: -29.5 kcal/mol 
p-value: 0.007663 
 
position  166 
target 5' C             C       U 
           AGUUUCUCCAAGC GCUUUAG  
           UCAAGGGGGUUUG UGAAGUC  
miRNA  3' C                       
 
 
target: AT1G16390.1 
length: 1791 
miRNA : ath-miR395e
length: 21 
 
mfe: -29.5 kcal/mol 
p-value: 0.010010 
 
position  166 
target 5' C             C       U 
           AGUUUCUCCAAGC GCUUUAG  
           UCAAGGGGGUUUG UGAAGUC  
miRNA  3' C                       
 
 
target: AT1G16390.1 
length: 1791 
miRNA : ath-miR395f
length: 21 
 
mfe: -29.1 kcal/mol 
p-value: 0.014336 
 
position  166 
target 5' C             C       U 
           AGUUUCUCCAAGC GCUUUAG  
           UCAGGGGGGUUUG UGAAGUC  
miRNA  3' C                       
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_22722
AccessionTaxon
NP_001042928Oryza sativa Japonica Group
NP_001059989Oryza sativa Japonica Group
NP_001059990Oryza sativa Japonica Group
NP_173089 ( AT1G16390 )Arabidopsis thaliana
NP_178054Arabidopsis thaliana
30119.m000593Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PROSITEPS508500.043496IPR020846Major facilitator superfamily
PfamPF000831.2000000000000005E-28118499IPR005828General substrate transporter
SuperFamilySSF1034731.1E-46122507IPR016196Major facilitator superfamily, general substrate transporter