You are querying gene by "AT1G15750".

Locus: AT1G15750 Alias: TPL

Hormone Evidence Function category Gene Description PMID
auxinGeneOntology - response to auxin stimulus 18258861

Basic gene information ( show / hide contents )

Locus AT1G15750 | Chromosome: 1 | Strand: -
Description response to auxin stimulus
Alias
TPL( alias )
WSIP1( alias )
Gene model
AT1G15750.1 | From: 5414812 | To: 5420625
AT1G15750.2 | From: 5414812 | To: 5420859
AT1G15750.3 | From: 5414812 | To: 5420791
AT1G15750.4 | From: 5414812 | To: 5420908
Sequence
AT1G15750.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT1G15750.2 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT1G15750.3 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT1G15750.4 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
protein binding PMID: 16461579
transcription repressor activity PMID: 18258861
protein homodimerization activity PMID: 18258861
cellular_component
nucleus PMID: 16763149
biological_process
xylem and phloem pattern formation PMID: 18258861
response to auxin stimulus PMID: 18258861
primary shoot apical meristem specification PMID: 16763149
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT1G15750.1 
length: 3829 
miRNA : ath-miR2112-3p
length: 21 
 
mfe: -25.0 kcal/mol 
p-value: 0.033149 
 
position  2338 
target 5' C   G  U  G            C 
           GCG AA AU GUGGAUGUGAAG  
           CGC UU UA CGCCUAUAUUUC  
miRNA  3' A   G                    
 
 
target: AT1G15750.1 
length: 3829 
miRNA : ath-miR397b
length: 21 
 
mfe: -25.6 kcal/mol 
p-value: 0.032517 
 
position  1812 
target 5' G    C         A      C 
           GUCG UGGUGUACU CAAUGG  
           UAGU GCUACGUGA GUUACU  
miRNA  3' G    U                  
 
 
target: AT1G15750.2 
length: 3969 
miRNA : ath-miR2112-3p
length: 21 
 
mfe: -25.0 kcal/mol 
p-value: 0.034317 
 
position  2478 
target 5' C   G  U  G            C 
           GCG AA AU GUGGAUGUGAAG  
           CGC UU UA CGCCUAUAUUUC  
miRNA  3' A   G                    
 
 
target: AT1G15750.2 
length: 3969 
miRNA : ath-miR397b
length: 21 
 
mfe: -25.6 kcal/mol 
p-value: 0.033735 
 
position  1952 
target 5' G    C         A      C 
           GUCG UGGUGUACU CAAUGG  
           UAGU GCUACGUGA GUUACU  
miRNA  3' G    U                  
 
 
target: AT1G15750.3 
length: 4102 
miRNA : ath-miR2112-3p
length: 21 
 
mfe: -25.0 kcal/mol 
p-value: 0.035417 
 
position  2611 
target 5' C   G  U  G            C 
           GCG AA AU GUGGAUGUGAAG  
           CGC UU UA CGCCUAUAUUUC  
miRNA  3' A   G                    
 
 
target: AT1G15750.3 
length: 4102 
miRNA : ath-miR397b
length: 21 
 
mfe: -25.6 kcal/mol 
p-value: 0.034885 
 
position  2085 
target 5' G    C         A      C 
           GUCG UGGUGUACU CAAUGG  
           UAGU GCUACGUGA GUUACU  
miRNA  3' G    U                  
 
 
target: AT1G15750.4 
length: 3830 
miRNA : ath-miR2112-3p
length: 21 
 
mfe: -25.0 kcal/mol 
p-value: 0.033158 
 
position  2339 
target 5' C   G  U  G            C 
           GCG AA AU GUGGAUGUGAAG  
           CGC UU UA CGCCUAUAUUUC  
miRNA  3' A   G                    
 
 
target: AT1G15750.4 
length: 3830 
miRNA : ath-miR397b
length: 21 
 
mfe: -25.6 kcal/mol 
p-value: 0.032525 
 
position  1813 
target 5' G    C         A      C 
           GUCG UGGUGUACU CAAUGG  
           UAGU GCUACGUGA GUUACU  
miRNA  3' G    U                  
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_19155
AccessionTaxon
NP_001031050Arabidopsis thaliana
NP_001031051 ( AT1G15750 )Arabidopsis thaliana
NP_178164Arabidopsis thaliana
NP_188209Arabidopsis thaliana
NP_188306Arabidopsis thaliana
NP_198055Arabidopsis thaliana
NP_563981Arabidopsis thaliana
NP_849672Arabidopsis thaliana
NP_849913Arabidopsis thaliana
NP_851003Arabidopsis thaliana
NP_001042616Oryza sativa Japonica Group
NP_001049587Oryza sativa Japonica Group
NP_001061055Oryza sativa Japonica Group
e_gw1.316.3.1Physcomitrella patens subsp. patens
estExt_fgenesh2_pm.C_990019Physcomitrella patens subsp. patens
29841.m002924Ricinus communis
29848.m004586Ricinus communis
29848.m004589Ricinus communis
29927.m000603Ricinus communis
30073.m002232Ricinus communis
30128.m008872Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
SMARTSM006673.6000003870073974E-5436IPR006594LisH dimerisation motif
PROSITEPS508960.0436IPR006594LisH dimerisation motif
SMARTSM006686.499993778843953E-163492IPR006595CTLH, C-terminal LisH motif
PROSITEPS508970.03492IPR006595CTLH, C-terminal LisH motif
SuperFamilySSF509782.9E-39342668IPR011046WD40 repeat-like-containing domain
SMARTSM0032036.000003870073975345384IPR001680WD40 repeat
SMARTSM0032032.99999833174915406445IPR001680WD40 repeat
PROSITEPS502940.0413634IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.108.200013071350027E-41419673IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003201.499999775833517E-5451492IPR001680WD40 repeat
PfamPF004000.0013000000000000006458492IPR019781WD40 repeat, subgroup
PROSITEPS500820.0458501IPR019782WD40 repeat 2
PROSITEPS006780.0479493IPR019775WD40 repeat, conserved site
SMARTSM003200.014000000733544052495536IPR001680WD40 repeat
PfamPF004000.58499535IPR019781WD40 repeat, subgroup
SMARTSM0032014.000000733544052539582IPR001680WD40 repeat
SMARTSM003200.5200000176360502585625IPR001680WD40 repeat
PROSITEPS500820.0593634IPR019782WD40 repeat 2
SuperFamilySSF509784.0E-337391094IPR011046WD40 repeat-like-containing domain
SMARTSM0032043.99999674397466825862IPR001680WD40 repeat
PROSITEPS502940.0831956IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.102.70000183580768E-268351092IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003200.750000004718944865905IPR001680WD40 repeat
SMARTSM003201.699999222840496E-5908947IPR001680WD40 repeat
PfamPF004000.014999999999999994910947IPR019781WD40 repeat, subgroup
PROSITEPS500820.0915956IPR019782WD40 repeat 2
PROSITEPS006780.0934948IPR019775WD40 repeat, conserved site
SMARTSM003203.0000000623271889991040IPR001680WD40 repeat
SMARTSM0032035.0000043291564910531093IPR001680WD40 repeat