You are querying gene by "AT1G15690".

Locus: AT1G15690 Alias: ATAVP3

Hormone Evidence Function category Gene Description PMID
auxinGeneOntology - auxin polar transport 16210544

Basic gene information ( show / hide contents )

Locus AT1G15690 | Chromosome: 1 | Strand: +
Description auxin polar transport
Alias
ATAVP3( alias )
AVP-3( alias )
AVP1( alias )
Gene model
AT1G15690.1 | From: 5398985 | To: 5402728
AT1G15690.2 | From: 5398985 | To: 5402728
Sequence
AT1G15690.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT1G15690.2 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
hydrogen-translocating pyrophosphatase activity PMID: 1311852
ATPase activity PMID:
cellular_component
vacuolar membrane PMID: 16618929
plant-type vacuole membrane PMID: 1311852
endosome membrane PMID: 16210544
mitochondrion PMID: 14671022
plasma membrane PMID: 16210544
biological_process
response to water deprivation PMID: 11572991
auxin polar transport PMID: 16210544
response to salt stress PMID: 11572991
establishment and/or maintenance of transmembrane electrochemical gradient PMID: 1311852
KEGG pathway This gene participates in 1 pathways:
Pathway Enzyme
Oxidative phosphorylation inorganic pyrophosphatase
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT1G15690.1 
length: 2772 
miRNA : ath-miR414
length: 21 
 
mfe: -25.2 kcal/mol 
p-value: 0.013269 
 
position  2478 
target 5' A  A           C   C  U 
           GA GAUGAUGAUGG GAU GA  
           CU CUACUACUACU CUA CU  
miRNA  3' A  G           U        
 
 
target: AT1G15690.1 
length: 2772 
miRNA : ath-miR414
length: 21 
 
mfe: -29.5 kcal/mol 
p-value: 0.001915 
 
position  2457 
target 5' A     C           A  A 
           GAUGA GAUGAUGAAGA GA  
           CUGCU CUACUACUUCU CU  
miRNA  3' A     A           A    
 
 
target: AT1G15690.1 
length: 2772 
miRNA : ath-miR415
length: 21 
 
mfe: -24.8 kcal/mol 
p-value: 0.009988 
 
position  2626 
target 5' C      C             U 
           UGUUUU UUUUUGUUCUGUU  
           ACAAGA AAAGACGAGACAA  
miRNA  3' U      C               
 
 
target: AT1G15690.1 
length: 2772 
miRNA : ath-miR824
length: 21 
 
mfe: -27.4 kcal/mol 
p-value: 0.015021 
 
position  719 
target 5' U       U G A            U 
           UUCCUUC U C GCGAGUGGUCUA  
           AGGGAAG A G UGUUUACCAGAU  
miRNA  3'                            
 
 
target: AT1G15690.2 
length: 2602 
miRNA : ath-miR414
length: 21 
 
mfe: -25.2 kcal/mol 
p-value: 0.012427 
 
position  2094 
target 5' A  A           C   C  U 
           GA GAUGAUGAUGG GAU GA  
           CU CUACUACUACU CUA CU  
miRNA  3' A  G           U        
 
 
target: AT1G15690.2 
length: 2602 
miRNA : ath-miR414
length: 21 
 
mfe: -29.5 kcal/mol 
p-value: 0.001772 
 
position  2073 
target 5' A     C           A  A 
           GAUGA GAUGAUGAAGA GA  
           CUGCU CUACUACUUCU CU  
miRNA  3' A     A           A    
 
 
target: AT1G15690.2 
length: 2602 
miRNA : ath-miR415
length: 21 
 
mfe: -24.8 kcal/mol 
p-value: 0.009181 
 
position  2242 
target 5' C      C             U 
           UGUUUU UUUUUGUUCUGUU  
           ACAAGA AAAGACGAGACAA  
miRNA  3' U      C               
 
 
target: AT1G15690.2 
length: 2602 
miRNA : ath-miR824
length: 21 
 
mfe: -27.4 kcal/mol 
p-value: 0.013966 
 
position  719 
target 5' U       U G A            U 
           UUCCUUC U C GCGAGUGGUCUA  
           AGGGAAG A G UGUUUACCAGAU  
miRNA  3'                            
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_12221
AccessionTaxon
NP_001077542Arabidopsis thaliana
NP_173021 ( AT1G15690 )Arabidopsis thaliana
137778Chlamydomonas reinhardtii
NP_001042938Oryza sativa Japonica Group
NP_001046107Oryza sativa Japonica Group
NP_001048422Oryza sativa Japonica Group
NP_001054701Oryza sativa Japonica Group
NP_001056966Oryza sativa Japonica Group
NP_001058184Oryza sativa Japonica Group
gw1.01.00.84.1Ostreococcus tauri
estExt_Genewise1.C_3460032Physcomitrella patens subsp. patens
estExt_Genewise1.C_4450001Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_3460028Physcomitrella patens subsp. patens
27394.m000344Ricinus communis
29841.m002904Ricinus communis
30128.m008901Ricinus communis
NP_001117619Arabidopsis thaliana
NP_173122Arabidopsis thaliana
NP_565195Arabidopsis thaliana
NP_001047051Oryza sativa Japonica Group
estExt_fgenesh1_pg.C_Chr_04.00010259Ostreococcus tauri
e_gw1.105.14.1Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_280143Physcomitrella patens subsp. patens
30169.m006632Ricinus communis
e_gw1.01.00.91.1Ostreococcus tauri
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PIRPIRSF0012650.04640IPR004131Inorganic H+ pyrophosphatase
PIRPIRSF00126504768IPR004131Inorganic H+ pyrophosphatase
TIGRFAMTIGR011040.06642IPR004131Inorganic H+ pyrophosphatase
TIGRFAMTIGR0110406766IPR004131Inorganic H+ pyrophosphatase
PfamPF030300.021633IPR004131Inorganic H+ pyrophosphatase
PfamPF030305.6e-26721756IPR004131Inorganic H+ pyrophosphatase