You are querying gene by "AT1G13980".

Locus: AT1G13980 Alias: EMB30

Expression of this gene is regulated by hormone (see microarray data for this gene), but no genetic evidence or Gene Ontology evidence yet supported that this is a hormone-related gene.

Basic gene information ( show / hide contents )

Locus AT1G13980 | Chromosome: 1 | Strand: +
Description Encodes a GDP/GTP exchange factor for small G-proteins of the ADP ribosylation factor (RAF) class, and as regulator of intracellular trafficking. Homologous to Sec7p and YEC2 from yeast. Involved in the specification of apical-basal pattern formation. Essential for cell division, expansion and adhesion. It appears that heteotypic binding between the DCB and C-terminal domains of two GNOM proteins is required for membrane association, however, GNOM appears to exist predominantly as a heterodimer formed through DCB-DCB interactions.
Alias
EMB30( alias )
GN( alias )
VAN7( alias )
Gene model
AT1G13980.1 | From: 4788556 | To: 4794651
Sequence
AT1G13980.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
GTP:GDP antiporter activity PMID: 10514379
protein homodimerization activity PMID: 18203920
cellular_component
intracellular PMID:
biological_process
unidimensional cell growth PMID: 8020095
lateral root primordium development PMID: 18394892
basipetal auxin transport PMID: 18394892
cell wall organization and biogenesis PMID: 11090208
cytokinesis by cell plate formation PMID: 8020095
cell adhesion PMID: 11090208
regulation of vesicle targeting, to, from or within Golgi PMID: 16553903
embryonic pattern specification PMID: 8020095
root hair cell differentiation PMID: 17084699
establishment of planar polarity PMID: 17084699
longitudinal axis specification PMID: 8020095
embryonic development ending in seed dormancy PMID: 8020095
phloem or xylem histogenesis PMID: 10887076
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT1G13980.1 
length: 4835 
miRNA : ath-miR771
length: 22 
 
mfe: -35.7 kcal/mol 
p-value: 0.005666 
 
position  1551 
target 5' A                    U 
           GA GGUUGCUAUGGAGGCUC  
           CU CCGAUGGUGUCUCCGAG  
miRNA  3' A  C                 U 
 
 
target: AT1G13980.1 
length: 4835 
miRNA : ath-miR773
length: 21 
 
mfe: -24.4 kcal/mol 
p-value: 0.121060 
 
position  956 
target 5' A                    C 
           AGA GAAAGCUGG AGUAGA  
           UCU UUUUCGACC UCGUUU  
miRNA  3' C   G         U        
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_12414
AccessionTaxon
NP_172851 ( AT1G13980 )Arabidopsis thaliana
NP_197462Arabidopsis thaliana
NP_198766Arabidopsis thaliana
195583Chlamydomonas reinhardtii
NP_001046707Oryza sativa Japonica Group
NP_001050844Oryza sativa Japonica Group
gw1.10.00.12.1Ostreococcus tauri
estExt_gwp_gw1.C_120250Physcomitrella patens subsp. patens
fgenesh1_pg.scaffold_29000145Physcomitrella patens subsp. patens
fgenesh2_pg.scaffold_99000016Physcomitrella patens subsp. patens
29635.m000459Ricinus communis
29751.m001855Ricinus communis
29813.m001539Ricinus communis
NP_001052052Oryza sativa Japonica Group
29912.m005551Ricinus communis
29912.m005553Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PROSITEPS501900.0554743IPR000904SEC7-like
SuperFamilySSF484251.3E-72556757IPR000904SEC7-like
SMARTSM002222.2999842048856962E-99558745IPR000904SEC7-like
PfamPF013694.900000000000004E-62561745IPR000904SEC7-like