You are querying gene by "AT1G13980".

Locus: AT1G13980 Alias: EMB30

Expression of this gene is regulated by hormone (see microarray data for this gene), but no genetic evidence or Gene Ontology evidence yet supported that this is a hormone-related gene.

Basic gene information ( show / hide contents )

Locus AT1G13980 | Chromosome: 1 | Strand: +
Description Encodes a GDP/GTP exchange factor for small G-proteins of the ADP ribosylation factor (RAF) class, and as regulator of intracellular trafficking. Homologous to Sec7p and YEC2 from yeast. Involved in the specification of apical-basal pattern formation. Essential for cell division, expansion and adhesion. It appears that heteotypic binding between the DCB and C-terminal domains of two GNOM proteins is required for membrane association, however, GNOM appears to exist predominantly as a heterodimer formed through DCB-DCB interactions.
EMB30( alias )
GN( alias )
VAN7( alias )
Gene model
AT1G13980.1 | From: 4788556 | To: 4794651
AT1G13980.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
GTP:GDP antiporter activity PMID: 10514379
protein homodimerization activity PMID: 18203920
intracellular PMID:
unidimensional cell growth PMID: 8020095
lateral root primordium development PMID: 18394892
basipetal auxin transport PMID: 18394892
cell wall organization and biogenesis PMID: 11090208
cytokinesis by cell plate formation PMID: 8020095
cell adhesion PMID: 11090208
regulation of vesicle targeting, to, from or within Golgi PMID: 16553903
embryonic pattern specification PMID: 8020095
root hair cell differentiation PMID: 17084699
establishment of planar polarity PMID: 17084699
longitudinal axis specification PMID: 8020095
embryonic development ending in seed dormancy PMID: 8020095
phloem or xylem histogenesis PMID: 10887076
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

Hormone treatment related datasets  
Abiotic stress treatment related datasets (in root)  
Abiotic stress treatment related datasets (in shoot)  
Development related datasets  

miRNA interaction information for this gene

(Note:target use cDNA sequence)
target: AT1G13980.1 
length: 4835 
miRNA : ath-miR771
length: 22 
mfe: -35.7 kcal/mol 
p-value: 0.005666 
position  1551 
target 5' A                    U 
miRNA  3' A  C                 U 
target: AT1G13980.1 
length: 4835 
miRNA : ath-miR773
length: 21 
mfe: -24.4 kcal/mol 
p-value: 0.121060 
position  956 
target 5' A                    C 
miRNA  3' C   G         U        

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_12414
NP_172851 ( AT1G13980 )Arabidopsis thaliana
NP_197462Arabidopsis thaliana
NP_198766Arabidopsis thaliana
195583Chlamydomonas reinhardtii
NP_001046707Oryza sativa Japonica Group
NP_001050844Oryza sativa Japonica Group
gw1. tauri
estExt_gwp_gw1.C_120250Physcomitrella patens subsp. patens
fgenesh1_pg.scaffold_29000145Physcomitrella patens subsp. patens
fgenesh2_pg.scaffold_99000016Physcomitrella patens subsp. patens
29635.m000459Ricinus communis
29751.m001855Ricinus communis
29813.m001539Ricinus communis
NP_001052052Oryza sativa Japonica Group
29912.m005551Ricinus communis
29912.m005553Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription