You are querying gene by "AT1G12820".

Locus: AT1G12820 Alias: AFB3

Hormone Evidence Function category Gene Description PMID
auxinMutant Hormone receptor TIR1 homolog F-box protein 15992545
GeneOntology - auxin binding 15917797

Basic gene information ( show / hide contents )

Locus AT1G12820 | Chromosome: 1 | Strand: -
Description TIR1 homolog F-box protein
Alias
AFB3( alias )
Gene model
AT1G12820.1 | From: 4368758 | To: 4371291
Sequence
AT1G12820.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
auxin binding PMID: 15917797
ubiquitin-protein ligase activity PMID:
cellular_component
cellular_component_unknown PMID:
biological_process
response to molecule of bacterial origin PMID: 16627744
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   auxin   ]

Genotype PMID Type
afb3 15992545 mutant
wxr1 tir1-1 afb3-1 20562234 mutant
wxr1 tir1-1 afb2-1 afb3-1 20562234 mutant

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT1G12820.1 
length: 2229 
miRNA : ath-miR2937
length: 21 
 
mfe: -26.2 kcal/mol 
p-value: 0.026409 
 
position  1743 
target 5' A   G                C 
           GAU CUUUCGAUAGCUUUUG  
           CUG GGAAGUUGUCGAGAAU  
miRNA  3'     A                A 
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_24415
AccessionTaxon
NP_563915 ( AT1G12820 )Arabidopsis thaliana
NP_566800Arabidopsis thaliana
NP_567135Arabidopsis thaliana
NP_567255Arabidopsis thaliana
NP_001052659Oryza sativa Japonica Group
NP_001054666Oryza sativa Japonica Group
estExt_fgenesh1_pm.C_160001Physcomitrella patens subsp. patens
estExt_fgenesh1_pm.C_440022Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_1370051Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_1960072Physcomitrella patens subsp. patens
29647.m002022Ricinus communis
29933.m001427Ricinus communis
30131.m006863Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
SMARTSM002565.800002906704665E-5445IPR001810F-box domain, cyclin-like