You are querying gene by "AT1G12610".

Locus: AT1G12610 Alias: DDF1

Hormone Evidence Function category Gene Description PMID
gibberellinGeneOntology - gibberellin biosynthetic process 14871311

Basic gene information ( show / hide contents )

Locus AT1G12610 | Chromosome: 1 | Strand: -
Description gibberellin biosynthetic process
Alias
DDF1( alias )
Gene model
AT1G12610.1 | From: 4289942 | To: 4291015
Sequence
AT1G12610.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
DNA binding PMID:
transcription factor activity PMID: 11118137
cellular_component
nucleus PMID:
biological_process
regulation of timing of transition from vegetative to reproductive phase PMID: 14871311
response to salt stress PMID: 14871311
cell growth PMID: 14871311
gibberellin biosynthetic process PMID: 14871311
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT1G12610.1 
length: 1074 
miRNA : ath-miR396a
length: 21 
 
mfe: -25.2 kcal/mol 
p-value: 0.015167 
 
position  497 
target 5' G    G   C        C    A 
           AGUU CGG GGAAGCUG GGAG  
           UCAA GUU CUUUCGAC CCUU  
miRNA  3' G                 A      
 
 
target: AT1G12610.1 
length: 1074 
miRNA : ath-miR396b
length: 21 
 
mfe: -25.7 kcal/mol 
p-value: 0.009063 
 
position  496 
target 5' A     G   C        C    A 
           GAGUU CGG GGAAGCUG GGAG  
           UUCAA GUU CUUUCGAC CCUU  
miRNA  3'                    A      
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_24356
AccessionTaxon
NP_001077764Arabidopsis thaliana
NP_172721 ( AT1G12610 )Arabidopsis thaliana
NP_176491Arabidopsis thaliana
30147.m014313Ricinus communis
30190.m011119Ricinus communis
30190.m011120Ricinus communis
NP_200012Arabidopsis thaliana
NP_567719Arabidopsis thaliana
NP_567720Arabidopsis thaliana
NP_567721Arabidopsis thaliana
NP_001047727Oryza sativa Japonica Group
NP_001053608Oryza sativa Japonica Group
NP_001056661Oryza sativa Japonica Group
DatabaseEntry IDE-valueStartEndInterPro IDDescription
Gene3DG3DSA:3.30.730.105.299996575502399E-202889IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
PfamPF008473.100000000000002E-92878IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
SuperFamilySSF541715.3E-212889IPR016177DNA-binding, integrase-type
SMARTSM003803.8999986179521835E-232992IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
PROSITEPS510320.02986IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
PRINTSPR003673.300001644806241E-73041IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
PRINTSPR003673.300001644806241E-75268IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding