You are querying gene by "AT1G10170".

Locus: AT1G10170 Alias: ATNFXL1

Hormone Evidence Function category Gene Description PMID
salicylic acidGeneOntology - salicylic acid biosynthetic process 18069941

Basic gene information ( show / hide contents )

Locus AT1G10170 | Chromosome: 1 | Strand: -
Description salicylic acid biosynthetic process
Alias
ATNFXL1( alias )
Gene model
AT1G10170.1 | From: 3333597 | To: 3337493
Sequence
AT1G10170.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
transcription factor activity PMID:
cellular_component
nucleus PMID:
biological_process
response to microbial phytotoxin PMID: 18069941
regulation of transcription, DNA-dependent PMID:
salicylic acid biosynthetic process PMID: 18069941
defense response to bacterium PMID: 18069941
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT1G10170.1 
length: 3897 
miRNA : ath-miR826
length: 21 
 
mfe: -24.7 kcal/mol 
p-value: 0.117270 
 
position  2672 
target 5' G    G         G  U    G 
           GCGU AUCCAAAGU GG ACUG  
           UGCA UAGGUUUUG CC UGAU  
miRNA  3' G              G         
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_12331
AccessionTaxon
NP_172488 ( AT1G10170 )Arabidopsis thaliana
NP_001057298Oryza sativa Japonica Group
estExt_gwp_gw1.C_2150073Physcomitrella patens subsp. patens
27791.m000083Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PROSITEPS500160.0220281IPR019787Zinc finger, PHD-finger
SMARTSM001840.07100000790987053223278IPR001841Zinc finger, RING-type
PROSITEPS013590.0223278IPR019786Zinc finger, PHD-type, conserved site
PROSITEPS500890.0223279IPR001841Zinc finger, RING-type
SMARTSM004380.020000002031953682335353IPR000967Zinc finger, NF-X1-type
PfamPF014220.022390408IPR000967Zinc finger, NF-X1-type
SMARTSM004384.699998106309889E-5390409IPR000967Zinc finger, NF-X1-type
SMARTSM004382.2999993566538005E-5454473IPR000967Zinc finger, NF-X1-type
SMARTSM004382.1000003726265565E-5513532IPR000967Zinc finger, NF-X1-type
SMARTSM00438149.9999775833517572607IPR000967Zinc finger, NF-X1-type
SMARTSM004381.799999516546772E-4611630IPR000967Zinc finger, NF-X1-type
SMARTSM004380.029999998564600405668686IPR000967Zinc finger, NF-X1-type
SMARTSM004384.100000492084246E-4721751IPR000967Zinc finger, NF-X1-type
SMARTSM004380.018000000106278665760781IPR000967Zinc finger, NF-X1-type